Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1424c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,598,895	-				+0.4
1,599,179	+		Rv1424c	0.38	-1.1
1,599,210	-		Rv1424c	0.42	-0.7
1,599,213	-		Rv1424c	0.42	-0.1
1,599,213	-		Rv1424c	0.42	-0.2
1,599,356	+		Rv1424c	0.61	-1.0
1,599,357	-		Rv1424c	0.61	-0.6
1,599,423	-		Rv1424c	0.70	-0.3
1,599,440	+		Rv1424c	0.72	-0.2
1,599,550	-		Rv1424c	0.86	-1.4
1,599,646	+				+4.1
1,599,655	-				-1.6
1,599,655	-				+0.2
1,599,655	-				-0.8
1,599,717	+				-0.7
1,599,717	+				+0.6
1,599,718	-				+1.4
1,599,767	-				-0.5
1,599,767	-				-0.3
1,599,980	-		Rv1425	0.23	-1.2
1,599,980	-		Rv1425	0.23	-0.3
1,600,481	-		Rv1425	0.60	-0.2
1,600,481	-		Rv1425	0.60	-0.1
1,600,612	-		Rv1425	0.69	+1.7