Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1141c

Experiment: pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4.5
1,267,319	-				+0.6
1,267,804	+		Rv1140	0.54	-0.3
1,267,805	-		Rv1140	0.54	-1.2
1,268,542	+		Rv1141c	0.42	-0.1
1,268,576	-		Rv1141c	0.46	+0.5
1,268,608	-		Rv1141c	0.50	-0.4
1,268,620	+		Rv1141c	0.52	-0.5
1,268,716	+		Rv1141c	0.64	+0.1
1,268,784	+		Rv1141c	0.72	-2.2
1,268,784	+		Rv1141c	0.72	-0.3
1,268,785	-		Rv1141c	0.72	-0.2
1,268,785	-		Rv1141c	0.72	-0.3
1,268,984	-				-0.5
1,269,022	-				-0.7
1,269,022	-				-0.3
1,269,022	-				-0.7
1,269,050	-				+0.3
1,269,099	+				+0.1
1,269,100	-				+0.3
1,269,220	+				-0.0
1,269,387	+		Rv1142c	0.29	+1.0
1,269,454	+		Rv1142c	0.37	-0.8
1,269,455	-		Rv1142c	0.38	+0.1
1,269,455	-		Rv1142c	0.38	-0.5
1,269,569	+		Rv1142c	0.52	-1.6
1,269,569	+		Rv1142c	0.52	-0.5
1,269,647	+		Rv1142c	0.61	-0.0
1,269,648	-		Rv1142c	0.61	-0.8
1,269,648	-		Rv1142c	0.61	+1.0
1,269,948	+				-1.6
1,269,964	+				+1.3
1,270,005	+				-2.2