Experiment: pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0789c and Rv0790c are separated by 21 nucleotides Rv0790c and Rv0791c overlap by 4 nucleotides Rv0791c and Rv0792c overlap by 4 nucleotides Rv0792c and Rv0793 are separated by 72 nucleotides
Rv0789c: Rv0789c - Hypothetical protein, at 883,451 to 884,050
Rv0789c
Rv0790c: Rv0790c - Hypothetical protein, at 884,072 to 884,800
Rv0790c
Rv0791c: Rv0791c - Conserved protein, at 884,797 to 885,840
Rv0791c
Rv0792c: Rv0792c - Probable transcriptional regulatory protein (probably GntR-family), at 885,837 to 886,646
Rv0792c
Rv0793: Rv0793 - Possible monooxygenase, at 886,719 to 887,024
Rv0793
Position (kb) 884
885
886 Strain fitness (log2 ratio) -1
0
1
2 at 883.875 kb on + strand, within Rv0789c at 884.150 kb on + strand, within Rv0790c at 884.151 kb on - strand, within Rv0790c at 884.232 kb on + strand, within Rv0790c at 884.232 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.377 kb on - strand, within Rv0790c at 884.632 kb on - strand, within Rv0790c at 884.649 kb on + strand, within Rv0790c at 884.649 kb on + strand, within Rv0790c at 884.650 kb on - strand, within Rv0790c at 884.652 kb on + strand, within Rv0790c at 884.653 kb on - strand, within Rv0790c at 884.655 kb on + strand, within Rv0790c at 884.655 kb on + strand, within Rv0790c at 884.656 kb on - strand, within Rv0790c at 884.745 kb on + strand at 884.745 kb on + strand at 884.746 kb on - strand at 884.859 kb on - strand at 884.859 kb on - strand at 884.918 kb on + strand, within Rv0791c at 884.919 kb on - strand, within Rv0791c at 885.285 kb on - strand, within Rv0791c at 885.380 kb on + strand, within Rv0791c at 885.381 kb on - strand, within Rv0791c at 885.491 kb on + strand, within Rv0791c at 885.492 kb on - strand, within Rv0791c at 885.685 kb on + strand, within Rv0791c at 885.970 kb on + strand, within Rv0792c at 886.030 kb on - strand, within Rv0792c at 886.030 kb on - strand, within Rv0792c at 886.083 kb on + strand, within Rv0792c at 886.083 kb on + strand, within Rv0792c at 886.083 kb on + strand, within Rv0792c at 886.084 kb on - strand, within Rv0792c at 886.111 kb on + strand, within Rv0792c at 886.111 kb on + strand, within Rv0792c at 886.111 kb on + strand, within Rv0792c at 886.111 kb on + strand, within Rv0792c at 886.112 kb on - strand, within Rv0792c at 886.112 kb on - strand, within Rv0792c at 886.112 kb on - strand, within Rv0792c at 886.112 kb on - strand, within Rv0792c at 886.232 kb on + strand, within Rv0792c at 886.320 kb on - strand, within Rv0792c at 886.400 kb on + strand, within Rv0792c at 886.400 kb on + strand, within Rv0792c at 886.400 kb on + strand, within Rv0792c at 886.423 kb on - strand, within Rv0792c at 886.835 kb on + strand, within Rv0793 at 886.836 kb on - strand, within Rv0793 at 886.839 kb on + strand, within Rv0793 at 886.839 kb on + strand, within Rv0793 at 886.839 kb on + strand, within Rv0793 at 886.839 kb on + strand, within Rv0793 at 886.840 kb on - strand, within Rv0793
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4.5 remove 883,875 + Rv0789c 0.71 -0.4 884,150 + Rv0790c 0.11 +0.1 884,151 - Rv0790c 0.11 +1.8 884,232 + Rv0790c 0.22 +0.5 884,232 + Rv0790c 0.22 +0.6 884,376 + Rv0790c 0.42 +1.2 884,376 + Rv0790c 0.42 +1.0 884,376 + Rv0790c 0.42 -0.2 884,376 + Rv0790c 0.42 -0.6 884,376 + Rv0790c 0.42 +0.1 884,377 - Rv0790c 0.42 -0.0 884,632 - Rv0790c 0.77 -0.7 884,649 + Rv0790c 0.79 -1.3 884,649 + Rv0790c 0.79 -1.6 884,650 - Rv0790c 0.79 -1.3 884,652 + Rv0790c 0.80 -0.8 884,653 - Rv0790c 0.80 -0.8 884,655 + Rv0790c 0.80 -0.2 884,655 + Rv0790c 0.80 +0.4 884,656 - Rv0790c 0.80 -0.4 884,745 + -0.6 884,745 + -0.8 884,746 - -0.4 884,859 - -0.3 884,859 - +0.8 884,918 + Rv0791c 0.12 +0.5 884,919 - Rv0791c 0.12 -0.1 885,285 - Rv0791c 0.47 -0.4 885,380 + Rv0791c 0.56 +1.6 885,381 - Rv0791c 0.56 +0.7 885,491 + Rv0791c 0.66 +0.6 885,492 - Rv0791c 0.67 +0.8 885,685 + Rv0791c 0.85 +0.4 885,970 + Rv0792c 0.16 -1.3 886,030 - Rv0792c 0.24 -0.7 886,030 - Rv0792c 0.24 -0.3 886,083 + Rv0792c 0.30 -0.8 886,083 + Rv0792c 0.30 +1.8 886,083 + Rv0792c 0.30 -0.1 886,084 - Rv0792c 0.30 -0.4 886,111 + Rv0792c 0.34 -0.5 886,111 + Rv0792c 0.34 -0.1 886,111 + Rv0792c 0.34 +0.8 886,111 + Rv0792c 0.34 -0.5 886,112 - Rv0792c 0.34 +1.5 886,112 - Rv0792c 0.34 +0.0 886,112 - Rv0792c 0.34 -0.8 886,112 - Rv0792c 0.34 -0.0 886,232 + Rv0792c 0.49 +0.4 886,320 - Rv0792c 0.60 +0.6 886,400 + Rv0792c 0.70 +0.3 886,400 + Rv0792c 0.70 +0.6 886,400 + Rv0792c 0.70 +0.8 886,423 - Rv0792c 0.72 -0.2 886,835 + Rv0793 0.38 -0.3 886,836 - Rv0793 0.38 -0.8 886,839 + Rv0793 0.39 -1.7 886,839 + Rv0793 0.39 -0.3 886,839 + Rv0793 0.39 -0.5 886,839 + Rv0793 0.39 +0.4 886,840 - Rv0793 0.40 -0.3
Or see this region's nucleotide sequence