Experiment: pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0673 and Rv0674 are separated by 2 nucleotides Rv0674 and Rv0675 overlap by 4 nucleotides Rv0675 and Rv0676c are separated by 11 nucleotides
Rv0673: Rv0673 - Possible enoyl-CoA hydratase EchA4 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase), at 773,123 to 774,061
Rv0673
Rv0674: Rv0674 - Conserved hypothetical protein, at 774,064 to 774,786
Rv0674
Rv0675: Rv0675 - Probable enoyl-CoA hydratase EchA5 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase), at 774,783 to 775,574
Rv0675
Rv0676c: Rv0676c - Probable conserved transmembrane transport protein MmpL5, at 775,586 to 778,480
Rv0676c
Position (kb) 774
775
776 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 774.490 kb on - strand, within Rv0674 at 775.492 kb on + strand, within Rv0675 at 775.748 kb on - strand at 775.933 kb on - strand, within Rv0676c at 776.160 kb on + strand, within Rv0676c at 776.160 kb on + strand, within Rv0676c at 776.160 kb on + strand, within Rv0676c at 776.160 kb on + strand, within Rv0676c at 776.160 kb on + strand, within Rv0676c at 776.161 kb on - strand, within Rv0676c at 776.161 kb on - strand, within Rv0676c at 776.161 kb on - strand, within Rv0676c at 776.211 kb on + strand, within Rv0676c at 776.212 kb on - strand, within Rv0676c at 776.412 kb on + strand, within Rv0676c at 776.412 kb on + strand, within Rv0676c at 776.412 kb on + strand, within Rv0676c at 776.413 kb on - strand, within Rv0676c at 776.413 kb on - strand, within Rv0676c at 776.413 kb on - strand, within Rv0676c
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4.5 remove 774,490 - Rv0674 0.59 -3.4 775,492 + Rv0675 0.90 -1.2 775,748 - -1.0 775,933 - Rv0676c 0.12 +0.1 776,160 + Rv0676c 0.20 -1.5 776,160 + Rv0676c 0.20 +0.0 776,160 + Rv0676c 0.20 +1.0 776,160 + Rv0676c 0.20 +0.0 776,160 + Rv0676c 0.20 -0.1 776,161 - Rv0676c 0.20 -1.1 776,161 - Rv0676c 0.20 -0.6 776,161 - Rv0676c 0.20 -0.1 776,211 + Rv0676c 0.22 +1.1 776,212 - Rv0676c 0.22 -0.3 776,412 + Rv0676c 0.29 -0.8 776,412 + Rv0676c 0.29 +0.4 776,412 + Rv0676c 0.29 +0.8 776,413 - Rv0676c 0.29 +0.1 776,413 - Rv0676c 0.29 +0.1 776,413 - Rv0676c 0.29 -0.1
Or see this region's nucleotide sequence