Experiment: pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0647c and Rv0648 are separated by 101 nucleotides Rv0648 and Rv0649 overlap by 4 nucleotides Rv0649 and Rv0650 overlap by 1 nucleotides
Rv0647c: Rv0647c - Conserved protein, at 741,151 to 742,617
Rv0647c
Rv0648: Rv0648 - Alpha-mannosidase, at 742,719 to 746,366
Rv0648
Rv0649: Rv0649 - Possible malonyl CoA-acyl carrier protein transacylase FabD2 (MCT), at 746,363 to 747,037
Rv0649
Rv0650: Rv0650 - Possible sugar kinase, at 747,037 to 747,945
Rv0650
Position (kb) 742
743
744
745
746
747 Strain fitness (log2 ratio) -2
-1
0
1 at 742.580 kb on + strand at 742.581 kb on - strand at 742.618 kb on + strand at 742.618 kb on + strand at 742.641 kb on + strand at 742.661 kb on + strand at 742.963 kb on + strand at 742.963 kb on + strand at 742.964 kb on - strand at 743.031 kb on + strand at 743.031 kb on + strand at 743.032 kb on - strand at 743.032 kb on - strand at 743.032 kb on - strand at 743.032 kb on - strand at 743.106 kb on + strand, within Rv0648 at 743.175 kb on + strand, within Rv0648 at 743.176 kb on - strand, within Rv0648 at 743.176 kb on - strand, within Rv0648 at 743.347 kb on - strand, within Rv0648 at 743.347 kb on - strand, within Rv0648 at 743.367 kb on + strand, within Rv0648 at 743.367 kb on + strand, within Rv0648 at 743.367 kb on + strand, within Rv0648 at 743.464 kb on - strand, within Rv0648 at 743.505 kb on + strand, within Rv0648 at 743.506 kb on - strand, within Rv0648 at 743.506 kb on - strand, within Rv0648 at 743.506 kb on - strand, within Rv0648 at 743.554 kb on - strand, within Rv0648 at 744.024 kb on + strand, within Rv0648 at 744.024 kb on + strand, within Rv0648 at 744.033 kb on + strand, within Rv0648 at 744.034 kb on - strand, within Rv0648 at 744.073 kb on + strand, within Rv0648 at 744.073 kb on + strand, within Rv0648 at 744.074 kb on - strand, within Rv0648 at 744.074 kb on - strand, within Rv0648 at 744.075 kb on - strand, within Rv0648 at 744.189 kb on + strand, within Rv0648 at 744.426 kb on + strand, within Rv0648 at 744.426 kb on + strand, within Rv0648 at 744.427 kb on - strand, within Rv0648 at 744.717 kb on + strand, within Rv0648 at 745.156 kb on - strand, within Rv0648 at 745.456 kb on + strand, within Rv0648 at 745.456 kb on + strand, within Rv0648 at 745.456 kb on + strand, within Rv0648 at 745.457 kb on - strand, within Rv0648 at 745.590 kb on - strand, within Rv0648 at 745.651 kb on - strand, within Rv0648 at 746.058 kb on + strand at 746.058 kb on + strand at 746.058 kb on + strand at 746.059 kb on - strand at 746.225 kb on - strand at 746.334 kb on + strand at 746.789 kb on + strand, within Rv0649 at 746.789 kb on + strand, within Rv0649 at 746.790 kb on - strand, within Rv0649 at 746.790 kb on - strand, within Rv0649 at 746.790 kb on - strand, within Rv0649 at 746.988 kb on - strand at 747.246 kb on + strand, within Rv0650 at 747.254 kb on + strand, within Rv0650
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4.5 remove 742,580 + -0.8 742,581 - +0.0 742,618 + +0.2 742,618 + +0.2 742,641 + +0.7 742,661 + -0.0 742,963 + -1.0 742,963 + +0.1 742,964 - -0.7 743,031 + -0.8 743,031 + +0.2 743,032 - -0.1 743,032 - -0.6 743,032 - +0.4 743,032 - +0.1 743,106 + Rv0648 0.11 +0.6 743,175 + Rv0648 0.12 +0.6 743,176 - Rv0648 0.13 +0.4 743,176 - Rv0648 0.13 -0.4 743,347 - Rv0648 0.17 -0.2 743,347 - Rv0648 0.17 -0.5 743,367 + Rv0648 0.18 -2.5 743,367 + Rv0648 0.18 -0.6 743,367 + Rv0648 0.18 -0.2 743,464 - Rv0648 0.20 -0.6 743,505 + Rv0648 0.22 +0.0 743,506 - Rv0648 0.22 +0.1 743,506 - Rv0648 0.22 +0.3 743,506 - Rv0648 0.22 -1.0 743,554 - Rv0648 0.23 -0.2 744,024 + Rv0648 0.36 -0.1 744,024 + Rv0648 0.36 -0.6 744,033 + Rv0648 0.36 -0.1 744,034 - Rv0648 0.36 -0.2 744,073 + Rv0648 0.37 -0.5 744,073 + Rv0648 0.37 +0.2 744,074 - Rv0648 0.37 +0.3 744,074 - Rv0648 0.37 -1.0 744,075 - Rv0648 0.37 -0.8 744,189 + Rv0648 0.40 -0.5 744,426 + Rv0648 0.47 -0.3 744,426 + Rv0648 0.47 -0.7 744,427 - Rv0648 0.47 -0.3 744,717 + Rv0648 0.55 -1.4 745,156 - Rv0648 0.67 -2.3 745,456 + Rv0648 0.75 -0.2 745,456 + Rv0648 0.75 -0.6 745,456 + Rv0648 0.75 +0.2 745,457 - Rv0648 0.75 -1.7 745,590 - Rv0648 0.79 +0.2 745,651 - Rv0648 0.80 -0.6 746,058 + +0.0 746,058 + -0.4 746,058 + -0.0 746,059 - -1.5 746,225 - -0.8 746,334 + -0.7 746,789 + Rv0649 0.63 -0.2 746,789 + Rv0649 0.63 -1.3 746,790 - Rv0649 0.63 -0.0 746,790 - Rv0649 0.63 -0.3 746,790 - Rv0649 0.63 +0.6 746,988 - -0.1 747,246 + Rv0650 0.23 +0.1 747,254 + Rv0650 0.24 -1.4
Or see this region's nucleotide sequence