Experiment: pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0486 and Rv0487 overlap by 4 nucleotides Rv0487 and Rv0488 are separated by 325 nucleotides
Rv0486: Rv0486 - Glycosyltransferase MshA, at 575,348 to 576,790
Rv0486
Rv0487: Rv0487 - Conserved hypothetical protein, at 576,787 to 577,338
Rv0487
Rv0488: Rv0488 - Probable conserved integral membrane protein, at 577,664 to 578,269
Rv0488
Position (kb) 576
577
578 Strain fitness (log2 ratio) -2
-1
0
1
2 at 576.689 kb on + strand at 576.853 kb on + strand, within Rv0487 at 576.853 kb on + strand, within Rv0487 at 577.013 kb on + strand, within Rv0487 at 577.013 kb on + strand, within Rv0487 at 577.013 kb on + strand, within Rv0487 at 577.014 kb on - strand, within Rv0487 at 577.014 kb on - strand, within Rv0487 at 577.014 kb on - strand, within Rv0487 at 577.060 kb on + strand, within Rv0487 at 577.087 kb on + strand, within Rv0487 at 577.088 kb on - strand, within Rv0487 at 577.157 kb on + strand, within Rv0487 at 577.158 kb on - strand, within Rv0487 at 577.158 kb on - strand, within Rv0487 at 577.284 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.337 kb on - strand at 577.498 kb on + strand at 577.499 kb on - strand at 577.499 kb on - strand at 577.619 kb on + strand at 577.734 kb on - strand, within Rv0488 at 577.734 kb on - strand, within Rv0488 at 577.832 kb on - strand, within Rv0488 at 578.003 kb on + strand, within Rv0488 at 578.003 kb on + strand, within Rv0488 at 578.098 kb on - strand, within Rv0488 at 578.098 kb on - strand, within Rv0488 at 578.098 kb on - strand, within Rv0488 at 578.278 kb on + strand at 578.291 kb on + strand at 578.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4.5 remove 576,689 + -1.6 576,853 + Rv0487 0.12 +0.0 576,853 + Rv0487 0.12 +1.5 577,013 + Rv0487 0.41 +0.1 577,013 + Rv0487 0.41 -1.0 577,013 + Rv0487 0.41 +0.4 577,014 - Rv0487 0.41 +0.3 577,014 - Rv0487 0.41 -1.3 577,014 - Rv0487 0.41 +2.5 577,060 + Rv0487 0.49 +0.6 577,087 + Rv0487 0.54 +0.7 577,088 - Rv0487 0.55 +0.9 577,157 + Rv0487 0.67 -1.4 577,158 - Rv0487 0.67 -0.4 577,158 - Rv0487 0.67 +1.5 577,284 - -0.9 577,337 - +1.4 577,337 - -1.4 577,337 - -2.6 577,337 - -0.5 577,337 - -0.6 577,337 - +1.8 577,337 - +0.2 577,498 + -1.1 577,499 - +0.1 577,499 - -0.8 577,619 + -0.8 577,734 - Rv0488 0.12 +0.3 577,734 - Rv0488 0.12 -0.5 577,832 - Rv0488 0.28 -0.3 578,003 + Rv0488 0.56 +1.0 578,003 + Rv0488 0.56 -0.5 578,098 - Rv0488 0.72 -0.6 578,098 - Rv0488 0.72 -1.2 578,098 - Rv0488 0.72 -0.8 578,278 + -0.7 578,291 + -0.4 578,291 + +0.3
Or see this region's nucleotide sequence