Experiment: pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0440 and Rv0441c are separated by 65 nucleotides Rv0441c and Rv0442c are separated by 26 nucleotides
Rv0440: Rv0440 - 60 kDa chaperonin 2 GroEL2 (protein CPN60-2) (GroEL protein 2) (65 kDa antigen) (heat shock protein 65) (cell wall protein A) (antigen A), at 528,608 to 530,230
Rv0440
Rv0441c: Rv0441c - Hypothetical protein, at 530,296 to 530,724
Rv0441c
Rv0442c: Rv0442c - PPE family protein PPE10, at 530,751 to 532,214
Rv0442c
Position (kb) 530
531 Strain fitness (log2 ratio) -1
0
1
2 at 530.297 kb on + strand at 530.297 kb on + strand at 530.297 kb on + strand at 530.298 kb on - strand at 530.298 kb on - strand at 530.298 kb on - strand at 530.326 kb on + strand at 530.326 kb on + strand at 530.327 kb on - strand at 530.469 kb on - strand, within Rv0441c at 530.475 kb on + strand, within Rv0441c at 530.475 kb on + strand, within Rv0441c at 530.535 kb on + strand, within Rv0441c at 530.536 kb on - strand, within Rv0441c at 530.672 kb on + strand, within Rv0441c at 530.708 kb on - strand at 530.708 kb on - strand at 530.736 kb on + strand at 530.736 kb on + strand at 530.792 kb on - strand at 530.818 kb on + strand at 530.819 kb on - strand at 530.852 kb on + strand at 530.853 kb on - strand at 530.921 kb on - strand, within Rv0442c at 530.939 kb on + strand, within Rv0442c at 530.939 kb on + strand, within Rv0442c at 530.940 kb on - strand, within Rv0442c at 530.940 kb on - strand, within Rv0442c at 530.940 kb on - strand, within Rv0442c at 531.166 kb on + strand, within Rv0442c at 531.167 kb on - strand, within Rv0442c at 531.214 kb on - strand, within Rv0442c at 531.363 kb on + strand, within Rv0442c at 531.363 kb on + strand, within Rv0442c
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4.5 remove 530,297 + -0.6 530,297 + -0.1 530,297 + -0.1 530,298 - -0.9 530,298 - +0.4 530,298 - -0.8 530,326 + +0.3 530,326 + +0.8 530,327 - -1.7 530,469 - Rv0441c 0.40 -1.7 530,475 + Rv0441c 0.42 -1.0 530,475 + Rv0441c 0.42 -0.3 530,535 + Rv0441c 0.56 -1.1 530,536 - Rv0441c 0.56 -0.1 530,672 + Rv0441c 0.88 -0.8 530,708 - -0.4 530,708 - -0.1 530,736 + +0.3 530,736 + -0.8 530,792 - -0.5 530,818 + -0.9 530,819 - -0.1 530,852 + -0.5 530,853 - -1.2 530,921 - Rv0442c 0.12 +1.8 530,939 + Rv0442c 0.13 -0.2 530,939 + Rv0442c 0.13 -0.3 530,940 - Rv0442c 0.13 +0.8 530,940 - Rv0442c 0.13 +0.1 530,940 - Rv0442c 0.13 +1.1 531,166 + Rv0442c 0.28 +1.0 531,167 - Rv0442c 0.28 -0.8 531,214 - Rv0442c 0.32 +0.1 531,363 + Rv0442c 0.42 +1.0 531,363 + Rv0442c 0.42 -0.3
Or see this region's nucleotide sequence