Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2623 and Rv2624c are separated by 2 nucleotides Rv2624c and Rv2625c are separated by 14 nucleotides Rv2625c and Rv2626c are separated by 58 nucleotides
Rv2623: Rv2623 - Universal stress protein family protein TB31.7, at 2,949,593 to 2,950,486
Rv2623
Rv2624c: Rv2624c - Universal stress protein family protein, at 2,950,489 to 2,951,307
Rv2624c
Rv2625c: Rv2625c - Probable conserved transmembrane alanine and leucine rich protein, at 2,951,322 to 2,952,503
Rv2625c
Rv2626c: Rv2626c - Hypoxic response protein 1 Hrp1, at 2,952,562 to 2,952,993
Rv2626c
Position (kb)
2951
2952
2953 Strain fitness (log2 ratio)
-1
0
1 at 2950.485 kb on - strand at 2950.661 kb on + strand, within Rv2624c at 2951.141 kb on + strand, within Rv2624c at 2951.263 kb on - strand at 2951.579 kb on + strand, within Rv2625c at 2951.693 kb on - strand, within Rv2625c at 2951.963 kb on + strand, within Rv2625c at 2951.986 kb on + strand, within Rv2625c at 2952.759 kb on - strand, within Rv2626c at 2952.914 kb on + strand, within Rv2626c at 2952.914 kb on + strand, within Rv2626c at 2953.020 kb on - strand at 2953.066 kb on - strand at 2953.106 kb on - strand at 2953.201 kb on + strand at 2953.201 kb on + strand at 2953.373 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,950,485 - -0.0 2,950,661 + Rv2624c 0.21 -0.8 2,951,141 + Rv2624c 0.80 -0.7 2,951,263 - -1.7 2,951,579 + Rv2625c 0.22 -0.3 2,951,693 - Rv2625c 0.31 +0.1 2,951,963 + Rv2625c 0.54 +0.4 2,951,986 + Rv2625c 0.56 -0.8 2,952,759 - Rv2626c 0.46 -0.2 2,952,914 + Rv2626c 0.81 -0.8 2,952,914 + Rv2626c 0.81 -0.8 2,953,020 - +0.6 2,953,066 - +1.1 2,953,106 - -0.3 2,953,201 + -0.6 2,953,201 + -1.0 2,953,373 + -0.5
Or see this region's nucleotide sequence