Experiment: 7H9 with hypochlorite 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3748 and Rv3749c are separated by 32 nucleotides Rv3749c and Rv3750c are separated by 67 nucleotides Rv3750c and Rv3751 are separated by 276 nucleotides Rv3751 and GFF3901 are separated by 41 nucleotides GFF3901 and Rv3752c are separated by 29 nucleotides
Rv3748: Rv3748 - Conserved hypothetical protein, at 4,197,236 to 4,197,595
Rv3748
Rv3749c: Rv3749c - Conserved hypothetical protein, at 4,197,628 to 4,198,137
Rv3749c
Rv3750c: Rv3750c - Possible excisionase, at 4,198,205 to 4,198,597
Rv3750c
Rv3751: Rv3751 - Probable integrase (fragment), at 4,198,874 to 4,199,089
Rv3751
GFF3901 - tRNA-Ser, at 4,199,131 to 4,199,217
GFF3901
Rv3752c: Rv3752c - Possible cytidine/deoxycytidylate deaminase, at 4,199,247 to 4,199,705
Rv3752c
Position (kb) 4198
4199 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4197.241 kb on - strand at 4197.510 kb on + strand, within Rv3748 at 4197.600 kb on + strand at 4197.600 kb on + strand at 4197.601 kb on - strand at 4197.601 kb on - strand at 4197.601 kb on - strand at 4197.630 kb on - strand at 4197.630 kb on - strand at 4197.630 kb on - strand at 4197.734 kb on - strand, within Rv3749c at 4197.734 kb on - strand, within Rv3749c at 4197.734 kb on - strand, within Rv3749c at 4197.767 kb on + strand, within Rv3749c at 4197.798 kb on + strand, within Rv3749c at 4197.813 kb on - strand, within Rv3749c at 4197.866 kb on + strand, within Rv3749c at 4197.867 kb on - strand, within Rv3749c at 4197.867 kb on - strand, within Rv3749c at 4197.875 kb on - strand, within Rv3749c at 4197.913 kb on + strand, within Rv3749c at 4197.913 kb on + strand, within Rv3749c at 4197.947 kb on - strand, within Rv3749c at 4197.965 kb on + strand, within Rv3749c at 4197.965 kb on + strand, within Rv3749c at 4197.965 kb on + strand, within Rv3749c at 4197.965 kb on + strand, within Rv3749c at 4197.965 kb on + strand, within Rv3749c at 4197.966 kb on - strand, within Rv3749c at 4197.966 kb on - strand, within Rv3749c at 4197.966 kb on - strand, within Rv3749c at 4198.104 kb on + strand at 4198.104 kb on + strand at 4198.105 kb on - strand at 4198.179 kb on - strand at 4198.179 kb on - strand at 4198.207 kb on - strand at 4198.266 kb on - strand, within Rv3750c at 4198.433 kb on + strand, within Rv3750c at 4198.497 kb on + strand, within Rv3750c at 4198.497 kb on + strand, within Rv3750c at 4198.498 kb on - strand, within Rv3750c at 4198.498 kb on - strand, within Rv3750c at 4198.623 kb on + strand at 4198.623 kb on + strand at 4198.624 kb on - strand at 4198.624 kb on - strand at 4198.664 kb on + strand at 4198.665 kb on - strand at 4198.707 kb on - strand at 4198.715 kb on + strand at 4198.716 kb on - strand at 4198.850 kb on - strand at 4199.016 kb on - strand, within Rv3751 at 4199.016 kb on - strand, within Rv3751
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with hypochlorite 0.4 vol% remove 4,197,241 - -1.0 4,197,510 + Rv3748 0.76 -0.5 4,197,600 + -0.4 4,197,600 + +1.0 4,197,601 - -1.0 4,197,601 - -1.8 4,197,601 - +0.0 4,197,630 - -0.2 4,197,630 - -0.3 4,197,630 - -0.4 4,197,734 - Rv3749c 0.21 -0.7 4,197,734 - Rv3749c 0.21 -0.9 4,197,734 - Rv3749c 0.21 +0.1 4,197,767 + Rv3749c 0.27 -0.4 4,197,798 + Rv3749c 0.33 -0.6 4,197,813 - Rv3749c 0.36 -2.1 4,197,866 + Rv3749c 0.47 -0.3 4,197,867 - Rv3749c 0.47 +1.2 4,197,867 - Rv3749c 0.47 -0.1 4,197,875 - Rv3749c 0.48 +0.6 4,197,913 + Rv3749c 0.56 +1.1 4,197,913 + Rv3749c 0.56 +0.0 4,197,947 - Rv3749c 0.63 +0.1 4,197,965 + Rv3749c 0.66 -0.7 4,197,965 + Rv3749c 0.66 -0.4 4,197,965 + Rv3749c 0.66 +1.5 4,197,965 + Rv3749c 0.66 +0.4 4,197,965 + Rv3749c 0.66 -0.0 4,197,966 - Rv3749c 0.66 +2.8 4,197,966 - Rv3749c 0.66 +0.8 4,197,966 - Rv3749c 0.66 -0.5 4,198,104 + -0.6 4,198,104 + -0.8 4,198,105 - -0.3 4,198,179 - -1.7 4,198,179 - -0.5 4,198,207 - +0.4 4,198,266 - Rv3750c 0.16 -0.3 4,198,433 + Rv3750c 0.58 +1.0 4,198,497 + Rv3750c 0.74 -0.3 4,198,497 + Rv3750c 0.74 -0.2 4,198,498 - Rv3750c 0.75 +1.6 4,198,498 - Rv3750c 0.75 +1.0 4,198,623 + +0.6 4,198,623 + -0.5 4,198,624 - -1.1 4,198,624 - -0.8 4,198,664 + -0.4 4,198,665 - +1.8 4,198,707 - -0.1 4,198,715 + -0.5 4,198,716 - -0.2 4,198,850 - -0.5 4,199,016 - Rv3751 0.66 +0.5 4,199,016 - Rv3751 0.66 +0.4
Or see this region's nucleotide sequence