Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2865

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
3,176,757	+		Rv2864c	0.72	-0.7
3,176,763	+		Rv2864c	0.72	-0.3
3,176,763	+		Rv2864c	0.72	-0.2
3,176,763	+		Rv2864c	0.72	-0.1
3,176,763	+		Rv2864c	0.72	-0.6
3,176,764	-		Rv2864c	0.72	+0.9
3,176,940	+		Rv2864c	0.82	-0.2
3,176,941	-		Rv2864c	0.82	-0.3
3,176,992	+		Rv2864c	0.85	-0.6
3,177,327	+				+0.8
3,177,338	+				+0.1
3,177,339	-				-0.8
3,177,339	-				+1.4
3,177,516	-				-0.0
3,177,528	+				+0.7
3,177,528	+				-0.6
3,177,693	+		Rv2865	0.55	-0.4
3,177,694	-		Rv2865	0.56	-0.3
3,177,765	+		Rv2865	0.81	+0.3
3,177,828	+				-0.9
3,177,828	+				+0.2
3,177,828	+				+3.4
3,177,829	-				-0.4
3,177,829	-				-0.0
3,178,000	-		Rv2866	0.67	-0.1
3,178,000	-		Rv2866	0.67	-0.4
3,178,012	-		Rv2866	0.72	+0.8
3,178,039	+		Rv2866	0.82	-0.1
3,178,039	+		Rv2866	0.82	-0.2
3,178,040	-		Rv2866	0.83	-0.3
3,178,075	-				+1.4
3,178,075	-				-0.3
3,178,083	+				+0.4
3,178,184	+				+0.5
3,178,219	-				-0.5
3,178,328	+				-0.2
3,178,329	-				+0.2
3,178,329	-				-1.3
3,178,334	+				+0.5
3,178,335	-				-1.2
3,178,378	+				-0.1
3,178,379	-				+0.6
3,178,440	-				-0.5
3,178,497	-				-1.5
3,178,549	+		Rv2867c	0.11	-0.4
3,178,549	+		Rv2867c	0.11	-0.6
3,178,550	-		Rv2867c	0.11	-1.0
3,178,550	-		Rv2867c	0.11	+0.9