Experiment: 7H9 with hypochlorite 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0453 and Rv0454 are separated by 104 nucleotides Rv0454 and Rv0455c are separated by 189 nucleotides Rv0455c and Rv0456c are separated by 67 nucleotides
Rv0453: Rv0453 - PPE family protein PPE11, at 543,174 to 544,730
Rv0453
Rv0454: Rv0454 - Conserved hypothetical protein, at 544,835 to 545,185
Rv0454
Rv0455c: Rv0455c - Conserved protein, at 545,375 to 545,821
Rv0455c
Rv0456c: Rv0456c - enoyl-CoA hydratase EchA2 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase), at 545,889 to 546,803
Rv0456c
Position (kb) 544
545
546 Strain fitness (log2 ratio) -2
-1
0
1
2 at 543.868 kb on - strand, within Rv0453 at 543.869 kb on + strand, within Rv0453 at 543.870 kb on - strand, within Rv0453 at 544.010 kb on + strand, within Rv0453 at 544.010 kb on + strand, within Rv0453 at 544.011 kb on - strand, within Rv0453 at 544.011 kb on - strand, within Rv0453 at 544.031 kb on + strand, within Rv0453 at 544.130 kb on - strand, within Rv0453 at 544.326 kb on + strand, within Rv0453 at 544.512 kb on - strand, within Rv0453 at 544.732 kb on + strand at 544.733 kb on - strand at 544.737 kb on + strand at 544.737 kb on + strand at 544.738 kb on - strand at 544.738 kb on - strand at 544.924 kb on + strand, within Rv0454 at 544.924 kb on + strand, within Rv0454 at 544.925 kb on - strand, within Rv0454 at 544.925 kb on - strand, within Rv0454 at 544.935 kb on - strand, within Rv0454 at 544.935 kb on - strand, within Rv0454 at 544.956 kb on + strand, within Rv0454 at 544.956 kb on + strand, within Rv0454 at 544.957 kb on - strand, within Rv0454 at 544.957 kb on - strand, within Rv0454 at 545.101 kb on + strand, within Rv0454 at 545.102 kb on - strand, within Rv0454 at 545.102 kb on - strand, within Rv0454 at 545.102 kb on - strand, within Rv0454 at 545.126 kb on - strand, within Rv0454 at 545.183 kb on + strand at 545.190 kb on - strand at 545.377 kb on - strand at 545.822 kb on - strand at 545.834 kb on - strand at 545.890 kb on + strand at 545.956 kb on + strand at 546.109 kb on + strand, within Rv0456c at 546.109 kb on + strand, within Rv0456c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with hypochlorite 0.4 vol% remove 543,868 - Rv0453 0.45 -0.2 543,869 + Rv0453 0.45 +1.2 543,870 - Rv0453 0.45 +1.0 544,010 + Rv0453 0.54 -0.9 544,010 + Rv0453 0.54 +0.5 544,011 - Rv0453 0.54 -0.9 544,011 - Rv0453 0.54 -0.6 544,031 + Rv0453 0.55 -0.5 544,130 - Rv0453 0.61 -2.1 544,326 + Rv0453 0.74 -0.6 544,512 - Rv0453 0.86 -0.0 544,732 + -0.5 544,733 - +0.9 544,737 + +0.2 544,737 + +1.0 544,738 - -1.2 544,738 - -0.6 544,924 + Rv0454 0.25 -0.8 544,924 + Rv0454 0.25 -0.6 544,925 - Rv0454 0.26 -0.5 544,925 - Rv0454 0.26 -0.6 544,935 - Rv0454 0.28 +0.5 544,935 - Rv0454 0.28 -1.6 544,956 + Rv0454 0.34 +0.3 544,956 + Rv0454 0.34 -1.1 544,957 - Rv0454 0.35 +0.9 544,957 - Rv0454 0.35 -0.3 545,101 + Rv0454 0.76 +0.3 545,102 - Rv0454 0.76 -0.4 545,102 - Rv0454 0.76 -0.8 545,102 - Rv0454 0.76 +0.6 545,126 - Rv0454 0.83 -0.8 545,183 + +0.1 545,190 - -0.3 545,377 - +1.9 545,822 - +0.4 545,834 - +0.3 545,890 + +0.1 545,956 + +0.1 546,109 + Rv0456c 0.24 -1.7 546,109 + Rv0456c 0.24 +0.5
Or see this region's nucleotide sequence