Experiment: 7H9 with hypochlorite 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0205 and Rv0206c overlap by 4 nucleotides Rv0206c and Rv0207c are separated by 65 nucleotides Rv0207c and Rv0208c are separated by 2 nucleotides
Rv0205: Rv0205 - Probable conserved transmembrane protein, at 243,384 to 244,487
Rv0205
Rv0206c: Rv0206c - Possible conserved transmembrane transport protein MmpL3, at 244,484 to 247,318
Rv0206c
Rv0207c: Rv0207c - Conserved hypothetical protein, at 247,384 to 248,112
Rv0207c
Rv0208c: Rv0208c - Hypothetical methlytransferase (methylase), at 248,115 to 248,906
Rv0208c
Position (kb) 244
245
246
247
248 Strain fitness (log2 ratio) -2
-1
0
1 at 243.866 kb on + strand, within Rv0205 at 243.867 kb on - strand, within Rv0205 at 243.895 kb on + strand, within Rv0205 at 243.895 kb on + strand, within Rv0205 at 243.921 kb on + strand, within Rv0205 at 243.945 kb on + strand, within Rv0205 at 243.945 kb on + strand, within Rv0205 at 243.946 kb on - strand, within Rv0205 at 243.946 kb on - strand, within Rv0205 at 244.485 kb on + strand at 244.486 kb on - strand at 244.623 kb on - strand at 244.623 kb on - strand at 247.723 kb on + strand, within Rv0207c at 247.724 kb on - strand, within Rv0207c at 247.724 kb on - strand, within Rv0207c at 248.053 kb on + strand at 248.120 kb on + strand at 248.206 kb on + strand, within Rv0208c at 248.206 kb on + strand, within Rv0208c at 248.311 kb on + strand, within Rv0208c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with hypochlorite 0.4 vol% remove 243,866 + Rv0205 0.44 +0.7 243,867 - Rv0205 0.44 +1.0 243,895 + Rv0205 0.46 -0.2 243,895 + Rv0205 0.46 -0.7 243,921 + Rv0205 0.49 -1.2 243,945 + Rv0205 0.51 -0.8 243,945 + Rv0205 0.51 +0.3 243,946 - Rv0205 0.51 -0.1 243,946 - Rv0205 0.51 -1.3 244,485 + -0.1 244,486 - -0.2 244,623 - +1.0 244,623 - -1.1 247,723 + Rv0207c 0.47 -1.3 247,724 - Rv0207c 0.47 -0.4 247,724 - Rv0207c 0.47 -0.9 248,053 + -0.0 248,120 + -2.3 248,206 + Rv0208c 0.11 -1.9 248,206 + Rv0208c 0.11 -1.0 248,311 + Rv0208c 0.25 -2.2
Or see this region's nucleotide sequence