Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS09810

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS09805 and ABIE51_RS09810 are separated by 31 nucleotidesABIE51_RS09810 and ABIE51_RS09815 are separated by 4 nucleotidesABIE51_RS09815 and ABIE51_RS09820 are separated by 74 nucleotides ABIE51_RS09805: ABIE51_RS09805 - M13 family metallopeptidase, at 2,116,696 to 2,118,717 _RS09805 ABIE51_RS09810: ABIE51_RS09810 - NAD(P)/FAD-dependent oxidoreductase, at 2,118,749 to 2,119,939 _RS09810 ABIE51_RS09815: ABIE51_RS09815 - YaeQ family protein, at 2,119,944 to 2,120,501 _RS09815 ABIE51_RS09820: ABIE51_RS09820 - response regulator, at 2,120,576 to 2,120,923 _RS09820 Position (kb) 2118 2119 2120Strain fitness (log2 ratio) -2 -1 0 1at 2117.773 kb on + strand, within ABIE51_RS09805at 2117.774 kb on - strand, within ABIE51_RS09805at 2117.774 kb on - strand, within ABIE51_RS09805at 2117.786 kb on - strand, within ABIE51_RS09805at 2117.960 kb on - strand, within ABIE51_RS09805at 2117.960 kb on - strand, within ABIE51_RS09805at 2118.106 kb on + strand, within ABIE51_RS09805at 2118.106 kb on + strand, within ABIE51_RS09805at 2118.107 kb on - strand, within ABIE51_RS09805at 2118.107 kb on - strand, within ABIE51_RS09805at 2118.107 kb on - strand, within ABIE51_RS09805at 2118.107 kb on - strand, within ABIE51_RS09805at 2118.107 kb on - strand, within ABIE51_RS09805at 2118.117 kb on - strand, within ABIE51_RS09805at 2118.194 kb on - strand, within ABIE51_RS09805at 2118.750 kb on + strandat 2118.751 kb on - strandat 2118.751 kb on - strandat 2118.801 kb on + strandat 2118.846 kb on + strandat 2119.008 kb on + strand, within ABIE51_RS09810at 2119.008 kb on + strand, within ABIE51_RS09810at 2119.009 kb on - strand, within ABIE51_RS09810at 2119.659 kb on + strand, within ABIE51_RS09810at 2119.708 kb on - strand, within ABIE51_RS09810at 2119.752 kb on + strand, within ABIE51_RS09810at 2119.753 kb on - strand, within ABIE51_RS09810at 2119.753 kb on - strand, within ABIE51_RS09810at 2119.927 kb on - strandat 2119.927 kb on - strandat 2119.927 kb on - strandat 2120.183 kb on - strand, within ABIE51_RS09815at 2120.281 kb on + strand, within ABIE51_RS09815at 2120.603 kb on + strandat 2120.604 kb on - strandat 2120.604 kb on - strandat 2120.901 kb on + strandat 2120.902 kb on - strandat 2120.902 kb on - strandat 2120.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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2,117,773 + ABIE51_RS09805 0.53 -0.8
2,117,774 - ABIE51_RS09805 0.53 -0.1
2,117,774 - ABIE51_RS09805 0.53 -0.2
2,117,786 - ABIE51_RS09805 0.54 +0.3
2,117,960 - ABIE51_RS09805 0.63 +0.8
2,117,960 - ABIE51_RS09805 0.63 -0.7
2,118,106 + ABIE51_RS09805 0.70 +0.3
2,118,106 + ABIE51_RS09805 0.70 +0.5
2,118,107 - ABIE51_RS09805 0.70 -0.2
2,118,107 - ABIE51_RS09805 0.70 -0.9
2,118,107 - ABIE51_RS09805 0.70 +0.4
2,118,107 - ABIE51_RS09805 0.70 +0.9
2,118,107 - ABIE51_RS09805 0.70 -0.2
2,118,117 - ABIE51_RS09805 0.70 +0.7
2,118,194 - ABIE51_RS09805 0.74 -0.1
2,118,750 + -0.3
2,118,751 - -0.3
2,118,751 - -0.1
2,118,801 + -1.4
2,118,846 + -0.3
2,119,008 + ABIE51_RS09810 0.22 -0.1
2,119,008 + ABIE51_RS09810 0.22 -0.8
2,119,009 - ABIE51_RS09810 0.22 -1.7
2,119,659 + ABIE51_RS09810 0.76 -0.8
2,119,708 - ABIE51_RS09810 0.81 -0.4
2,119,752 + ABIE51_RS09810 0.84 +0.0
2,119,753 - ABIE51_RS09810 0.84 -1.4
2,119,753 - ABIE51_RS09810 0.84 +0.4
2,119,927 - +0.3
2,119,927 - -0.4
2,119,927 - -0.3
2,120,183 - ABIE51_RS09815 0.43 -2.2
2,120,281 + ABIE51_RS09815 0.60 -0.4
2,120,603 + +0.2
2,120,604 - -0.3
2,120,604 - -0.3
2,120,901 + +0.2
2,120,902 - +0.6
2,120,902 - -0.1
2,120,902 - +0.1

Or see this region's nucleotide sequence