Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS09805 and ABIE51_RS09810 are separated by 31 nucleotides ABIE51_RS09810 and ABIE51_RS09815 are separated by 4 nucleotides ABIE51_RS09815 and ABIE51_RS09820 are separated by 74 nucleotides
ABIE51_RS09805: ABIE51_RS09805 - M13 family metallopeptidase, at 2,116,696 to 2,118,717
_RS09805
ABIE51_RS09810: ABIE51_RS09810 - NAD(P)/FAD-dependent oxidoreductase, at 2,118,749 to 2,119,939
_RS09810
ABIE51_RS09815: ABIE51_RS09815 - YaeQ family protein, at 2,119,944 to 2,120,501
_RS09815
ABIE51_RS09820: ABIE51_RS09820 - response regulator, at 2,120,576 to 2,120,923
_RS09820
Position (kb)
2118
2119
2120 Strain fitness (log2 ratio)
-2
-1
0
1 at 2117.773 kb on + strand, within ABIE51_RS09805 at 2117.774 kb on - strand, within ABIE51_RS09805 at 2117.774 kb on - strand, within ABIE51_RS09805 at 2117.786 kb on - strand, within ABIE51_RS09805 at 2117.960 kb on - strand, within ABIE51_RS09805 at 2117.960 kb on - strand, within ABIE51_RS09805 at 2118.106 kb on + strand, within ABIE51_RS09805 at 2118.106 kb on + strand, within ABIE51_RS09805 at 2118.107 kb on - strand, within ABIE51_RS09805 at 2118.107 kb on - strand, within ABIE51_RS09805 at 2118.107 kb on - strand, within ABIE51_RS09805 at 2118.107 kb on - strand, within ABIE51_RS09805 at 2118.107 kb on - strand, within ABIE51_RS09805 at 2118.117 kb on - strand, within ABIE51_RS09805 at 2118.194 kb on - strand, within ABIE51_RS09805 at 2118.750 kb on + strand at 2118.751 kb on - strand at 2118.751 kb on - strand at 2118.801 kb on + strand at 2118.846 kb on + strand at 2119.008 kb on + strand, within ABIE51_RS09810 at 2119.008 kb on + strand, within ABIE51_RS09810 at 2119.009 kb on - strand, within ABIE51_RS09810 at 2119.659 kb on + strand, within ABIE51_RS09810 at 2119.708 kb on - strand, within ABIE51_RS09810 at 2119.752 kb on + strand, within ABIE51_RS09810 at 2119.753 kb on - strand, within ABIE51_RS09810 at 2119.753 kb on - strand, within ABIE51_RS09810 at 2119.927 kb on - strand at 2119.927 kb on - strand at 2119.927 kb on - strand at 2120.183 kb on - strand, within ABIE51_RS09815 at 2120.281 kb on + strand, within ABIE51_RS09815 at 2120.603 kb on + strand at 2120.604 kb on - strand at 2120.604 kb on - strand at 2120.901 kb on + strand at 2120.902 kb on - strand at 2120.902 kb on - strand at 2120.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 2,117,773 + ABIE51_RS09805 0.53 -0.8 2,117,774 - ABIE51_RS09805 0.53 -0.1 2,117,774 - ABIE51_RS09805 0.53 -0.2 2,117,786 - ABIE51_RS09805 0.54 +0.3 2,117,960 - ABIE51_RS09805 0.63 +0.8 2,117,960 - ABIE51_RS09805 0.63 -0.7 2,118,106 + ABIE51_RS09805 0.70 +0.3 2,118,106 + ABIE51_RS09805 0.70 +0.5 2,118,107 - ABIE51_RS09805 0.70 -0.2 2,118,107 - ABIE51_RS09805 0.70 -0.9 2,118,107 - ABIE51_RS09805 0.70 +0.4 2,118,107 - ABIE51_RS09805 0.70 +0.9 2,118,107 - ABIE51_RS09805 0.70 -0.2 2,118,117 - ABIE51_RS09805 0.70 +0.7 2,118,194 - ABIE51_RS09805 0.74 -0.1 2,118,750 + -0.3 2,118,751 - -0.3 2,118,751 - -0.1 2,118,801 + -1.4 2,118,846 + -0.3 2,119,008 + ABIE51_RS09810 0.22 -0.1 2,119,008 + ABIE51_RS09810 0.22 -0.8 2,119,009 - ABIE51_RS09810 0.22 -1.7 2,119,659 + ABIE51_RS09810 0.76 -0.8 2,119,708 - ABIE51_RS09810 0.81 -0.4 2,119,752 + ABIE51_RS09810 0.84 +0.0 2,119,753 - ABIE51_RS09810 0.84 -1.4 2,119,753 - ABIE51_RS09810 0.84 +0.4 2,119,927 - +0.3 2,119,927 - -0.4 2,119,927 - -0.3 2,120,183 - ABIE51_RS09815 0.43 -2.2 2,120,281 + ABIE51_RS09815 0.60 -0.4 2,120,603 + +0.2 2,120,604 - -0.3 2,120,604 - -0.3 2,120,901 + +0.2 2,120,902 - +0.6 2,120,902 - -0.1 2,120,902 - +0.1
Or see this region's nucleotide sequence