Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3813c

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
4,277,410	+		Rv3812	0.55	+0.3
4,277,411	-		Rv3812	0.55	+0.0
4,277,492	+		Rv3812	0.61	-1.0
4,277,493	-		Rv3812	0.61	+0.7
4,277,493	-		Rv3812	0.61	-1.2
4,277,660	+		Rv3812	0.72	+2.8
4,277,747	+		Rv3812	0.78	+0.1
4,277,748	-		Rv3812	0.78	+0.0
4,277,752	-		Rv3812	0.78	+1.3
4,277,793	+		Rv3812	0.81	-0.5
4,277,794	-		Rv3812	0.81	+0.3
4,278,041	+				-3.1
4,278,041	+				-0.6
4,278,041	+				-0.6
4,278,042	-				+1.4
4,278,042	-				-0.1
4,278,113	+				+0.5
4,278,114	-				+0.0
4,278,114	-				-0.2
4,278,395	+				+1.8
4,278,663	-		Rv3813c	0.33	+2.8
4,278,735	+		Rv3813c	0.41	-1.1
4,278,821	+		Rv3813c	0.52	-2.8
4,278,822	-		Rv3813c	0.52	+1.8
4,279,108	+		Rv3813c	0.87	-0.4
4,279,109	-		Rv3813c	0.87	+0.8
4,279,396	+		Rv3814c	0.21	-0.2
4,279,407	+		Rv3814c	0.23	+0.0
4,279,407	+		Rv3814c	0.23	+1.3
4,279,584	-		Rv3814c	0.45	+0.3
4,279,658	+		Rv3814c	0.54	+1.0
4,279,675	-		Rv3814c	0.57	-0.2
4,279,778	-		Rv3814c	0.70	-0.8
4,279,791	+		Rv3814c	0.71	-3.4
4,279,792	-		Rv3814c	0.72	+0.1
4,279,876	+		Rv3814c	0.82	-0.2
4,279,877	-		Rv3814c	0.82	-0.9
4,279,877	-		Rv3814c	0.82	-0.5
4,279,877	-		Rv3814c	0.82	-0.1
4,280,017	+				+1.7
4,280,018	-				-1.2
4,280,018	-				-0.8
4,280,018	-				+2.4
4,280,034	+				-0.3