Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3704c

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
4,145,927	+		Rv3703c	0.24	-0.8
4,145,927	+		Rv3703c	0.24	-0.4
4,145,928	-		Rv3703c	0.25	-0.3
4,145,928	-		Rv3703c	0.25	-0.7
4,146,069	-		Rv3703c	0.36	-1.0
4,146,225	-		Rv3703c	0.48	-1.2
4,146,225	-		Rv3703c	0.48	-0.7
4,146,463	+		Rv3703c	0.66	-0.3
4,146,464	-		Rv3703c	0.67	-0.8
4,146,596	+		Rv3703c	0.77	-0.2
4,146,668	+		Rv3703c	0.82	-0.6
4,146,669	-		Rv3703c	0.83	-0.2
4,146,669	-		Rv3703c	0.83	-1.3
4,147,366	+		Rv3704c	0.37	-1.0
4,147,435	+		Rv3704c	0.42	-1.1
4,147,435	+		Rv3704c	0.42	-0.6
4,147,436	-		Rv3704c	0.42	-1.2
4,147,436	-		Rv3704c	0.42	-1.1
4,147,439	+		Rv3704c	0.42	-0.5
4,147,440	-		Rv3704c	0.42	+0.1
4,147,440	-		Rv3704c	0.42	-0.9
4,147,440	-		Rv3704c	0.42	-0.5
4,148,092	+				-1.1
4,148,093	-				-0.9
4,148,093	-				+1.1
4,148,186	+				-0.5
4,148,186	+				-0.8
4,148,186	+				-1.0
4,148,186	+				-0.9
4,148,405	+		Rv3705c	0.13	-0.2
4,148,625	-		Rv3705c	0.48	+0.2
4,148,715	+		Rv3705c	0.62	-0.6
4,148,715	+		Rv3705c	0.62	+1.4
4,148,716	-		Rv3705c	0.62	+0.3
4,148,716	-		Rv3705c	0.62	-0.5
4,148,760	-		Rv3705c	0.69	-0.5
4,148,859	+		Rv3705c	0.84	-0.9
4,148,918	+				+1.2
4,148,918	+				-1.1
4,148,919	-				+0.4
4,148,927	+				-0.5
4,148,968	+				+1.8
4,148,969	-				-0.0