Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3400

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
3,816,263	+		Rv3399	0.13	+0.8
3,816,482	+		Rv3399	0.34	-0.6
3,816,516	+		Rv3399	0.37	-0.0
3,816,562	+		Rv3399	0.41	+0.5
3,817,038	+		Rv3399	0.87	-0.5
3,817,129	+				-0.2
3,817,129	+				-1.0
3,817,173	+				+1.2
3,817,190	-				-0.8
3,817,201	+				+0.2
3,817,217	+				+0.9
3,817,392	+		Rv3400	0.19	-1.0
3,817,392	+		Rv3400	0.19	-0.5
3,817,393	-		Rv3400	0.20	-1.6
3,817,464	+		Rv3400	0.29	-0.3
3,817,572	+		Rv3400	0.42	-0.2
3,817,572	+		Rv3400	0.42	-1.3
3,817,572	+		Rv3400	0.42	-1.4
3,817,573	-		Rv3400	0.42	-1.5
3,817,573	-		Rv3400	0.42	-1.3
3,817,928	-		Rv3400	0.87	+0.4
3,818,161	-				+0.9
3,818,504	+		Rv3401	0.20	+0.2
3,818,505	-		Rv3401	0.20	+1.8
3,818,505	-		Rv3401	0.20	-0.0
3,818,626	-		Rv3401	0.25	-0.5
3,818,832	-		Rv3401	0.33	-0.3
3,818,841	-		Rv3401	0.34	-0.5
3,818,841	-		Rv3401	0.34	-0.3