Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3310

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
3,696,364	+				+0.2
3,696,523	-				+1.3
3,696,523	-				-1.0
3,696,726	-		Rv3309c	0.41	+0.0
3,696,972	+		Rv3309c	0.80	+0.2
3,696,972	+		Rv3309c	0.80	+1.8
3,696,972	+		Rv3309c	0.80	+0.7
3,696,973	-		Rv3309c	0.81	+1.8
3,697,107	-				-1.6
3,697,107	-				-0.6
3,697,107	-				-0.2
3,697,109	-				-0.2
3,697,109	-				-0.4
3,697,110	+				+0.0
3,697,111	-				-1.8
3,697,111	-				-0.2
3,697,111	-				-0.5
3,697,187	-				+0.4
3,697,187	-				-0.5
3,697,188	+				-0.7
3,697,189	-				-0.8
3,697,189	-				-0.3
3,697,241	+				+0.3
3,697,597	+		Rv3310	0.44	-1.0
3,697,663	+		Rv3310	0.52	+1.8
3,697,698	+		Rv3310	0.56	-0.9
3,697,754	-		Rv3310	0.62	-0.2
3,697,861	+		Rv3310	0.74	-0.6
3,697,862	-		Rv3310	0.74	+0.8
3,697,982	-		Rv3310	0.87	+0.8
3,698,032	+				-0.8
3,698,032	+				+0.1
3,698,076	-				-1.4
3,698,096	-				-1.2
3,698,137	+				-0.2
3,698,137	+				+0.0
3,698,172	+				-0.5
3,698,247	+				-0.8
3,698,247	+				+0.5
3,698,824	+		Rv3311	0.56	-2.0