Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3288c

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
3,668,663	+		Rv3286c	0.63	+1.8
3,668,916	-				-0.3
3,669,076	+		Rv3287c	0.29	+2.8
3,669,077	-		Rv3287c	0.29	-0.2
3,669,419	-				-0.3
3,669,473	+				-0.1
3,669,485	-				-0.6
3,669,515	+				-0.3
3,669,578	+				+0.6
3,669,578	+				+0.0
3,669,578	+				-1.3
3,669,578	+				+0.2
3,669,579	-				-2.1
3,669,579	-				-1.6
3,669,588	-				+0.2
3,669,624	-				-0.1
3,669,630	-		Rv3288c	0.11	-3.0
3,669,804	-		Rv3288c	0.53	-0.7
3,669,884	+		Rv3288c	0.72	+0.6
3,669,884	+		Rv3288c	0.72	+1.8
3,669,884	+		Rv3288c	0.72	+1.8
3,669,884	+		Rv3288c	0.72	-0.1
3,669,885	-		Rv3288c	0.72	-1.2
3,669,885	-		Rv3288c	0.72	+0.4
3,669,885	-		Rv3288c	0.72	-1.5
3,669,885	-		Rv3288c	0.72	-0.6
3,669,885	-		Rv3288c	0.72	-2.9
3,669,918	+		Rv3288c	0.80	-0.5
3,669,939	+		Rv3288c	0.85	-0.7
3,669,962	-				-1.3
3,670,001	+				+0.2
3,670,001	+				-0.5
3,670,074	-		Rv3289c	0.11	-1.7
3,670,074	-		Rv3289c	0.11	-0.5
3,670,138	+		Rv3289c	0.28	-0.4
3,670,138	+		Rv3289c	0.28	-0.5
3,670,139	-		Rv3289c	0.28	-0.2
3,670,139	-		Rv3289c	0.28	-0.5
3,670,294	+		Rv3289c	0.69	-2.6
3,670,401	-				-1.0
3,670,401	-				-0.2
3,670,446	+				-0.8
3,670,447	-				-0.4
3,670,621	+		Rv3290c	0.13	+1.5
3,670,707	+		Rv3290c	0.19	-0.2
3,670,708	-		Rv3290c	0.19	-0.5
3,670,708	-		Rv3290c	0.19	+1.1
3,670,711	+		Rv3290c	0.20	-1.9
3,670,711	+		Rv3290c	0.20	-1.9
3,670,712	-		Rv3290c	0.20	-1.1
3,670,712	-		Rv3290c	0.20	-0.1
3,670,790	-		Rv3290c	0.26	-0.1
3,670,883	+		Rv3290c	0.32	-0.4
3,670,883	+		Rv3290c	0.32	-0.5
3,670,939	-		Rv3290c	0.37	+0.3
3,670,976	+		Rv3290c	0.39	-0.4
3,670,977	-		Rv3290c	0.39	+1.6