Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3222c

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
3,597,416	+				-1.0
3,597,552	+				+1.8
3,597,838	-				-1.3
3,597,838	-				+1.8
3,597,838	-				+0.0
3,597,847	+				-1.8
3,597,847	+				-1.9
3,597,848	-				+1.8
3,597,848	-				-0.4
3,597,848	-				-0.2
3,597,877	+				-1.1
3,597,985	-				-0.4
3,598,003	+				-0.1
3,598,003	+				+1.0
3,598,003	+				-0.7
3,598,039	+				-0.5
3,598,789	-		Rv3222c	0.79	-1.5
3,598,789	-		Rv3222c	0.79	-3.3
3,599,082	+		Rv3223c	0.28	-1.8
3,599,083	-		Rv3223c	0.28	+1.8
3,599,153	+		Rv3223c	0.39	-1.8
3,599,271	+		Rv3223c	0.57	+0.4
3,599,283	+		Rv3223c	0.59	+0.6
3,599,284	-		Rv3223c	0.59	-0.5
3,599,284	-		Rv3223c	0.59	+1.1
3,599,356	-		Rv3223c	0.70	+1.0
3,599,356	-		Rv3223c	0.70	-2.8
3,599,431	-		Rv3223c	0.81	+1.8
3,599,431	-		Rv3223c	0.81	+0.7
3,599,559	-				-0.5
3,599,559	-				+0.6
3,599,690	+				-1.1
3,599,690	+				-0.2
3,599,691	-				-3.4
3,599,691	-				-0.5
3,599,691	-				-1.0
3,599,778	+				-1.4