Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2606c

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
2,932,440	-		Rv2605c	0.17	+0.4
2,932,440	-		Rv2605c	0.17	+1.9
2,932,789	-		Rv2605c	0.58	-1.2
2,932,846	+		Rv2605c	0.65	+0.1
2,932,985	+		Rv2605c	0.81	-0.6
2,932,985	+		Rv2605c	0.81	-0.9
2,933,032	+		Rv2605c	0.87	-0.6
2,933,033	-		Rv2605c	0.87	-2.4
2,933,757	+		Rv2606c	0.65	-0.4
2,933,758	-		Rv2606c	0.65	-0.6
2,933,758	-		Rv2606c	0.65	-1.1
2,933,758	-		Rv2606c	0.65	-1.3
2,933,815	+		Rv2606c	0.72	-1.4
2,933,816	-		Rv2606c	0.72	-0.3
2,934,055	+				-0.1
2,934,092	+				-0.8
2,934,093	-				-0.6
2,934,093	-				-2.0
2,934,097	+				-0.3
2,934,097	+				-0.1
2,934,163	-				+0.2
2,934,478	-		Rv2607	0.41	+0.5
2,934,478	-		Rv2607	0.41	-1.3
2,934,478	-		Rv2607	0.41	+0.2
2,934,516	+		Rv2607	0.47	+0.1
2,934,517	-		Rv2607	0.47	+0.5
2,934,517	-		Rv2607	0.47	-0.4
2,934,540	+		Rv2607	0.51	-0.5
2,934,547	+		Rv2607	0.52	-0.9
2,934,547	+		Rv2607	0.52	+1.7
2,934,565	+		Rv2607	0.54	-0.1
2,934,565	+		Rv2607	0.54	-1.2
2,934,565	+		Rv2607	0.54	-0.6
2,934,565	+		Rv2607	0.54	+1.8
2,934,565	+		Rv2607	0.54	+0.6
2,934,566	-		Rv2607	0.55	-0.9
2,934,566	-		Rv2607	0.55	-0.3
2,934,601	+		Rv2607	0.60	-0.0
2,934,601	+		Rv2607	0.60	+1.8
2,934,602	-		Rv2607	0.60	-0.4
2,934,602	-		Rv2607	0.60	-0.6
2,934,609	+		Rv2607	0.61	-0.4
2,934,609	+		Rv2607	0.61	+0.7
2,934,610	-		Rv2607	0.61	+0.7
2,934,939	+				-0.1
2,934,939	+				-0.8
2,934,992	+				+1.8
2,935,037	+				+1.8
2,935,037	+				-0.8
2,935,037	+				+0.5
2,935,038	-				+0.3
2,935,038	-				-1.4