Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2548

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
2,867,880	+		Rv2545	0.35	+0.3
2,867,907	+		Rv2545	0.44	+0.2
2,867,907	+		Rv2545	0.44	-0.8
2,867,907	+		Rv2545	0.44	-2.0
2,867,907	+		Rv2545	0.44	-1.0
2,867,907	+		Rv2545	0.44	+0.3
2,867,907	+		Rv2545	0.44	-0.3
2,867,907	+		Rv2545	0.44	-0.0
2,867,907	+		Rv2545	0.44	-0.5
2,867,907	+		Rv2545	0.44	-0.8
2,867,908	-		Rv2545	0.45	+0.0
2,867,910	-		Rv2545	0.46	+1.9
2,867,928	+		Rv2545	0.52	+0.1
2,867,928	+		Rv2545	0.52	+0.7
2,867,928	+		Rv2545	0.52	-0.1
2,867,928	+		Rv2545	0.52	-0.2
2,867,929	-		Rv2545	0.52	-0.6
2,867,930	+		Rv2545	0.53	-1.6
2,867,931	-		Rv2545	0.53	+0.5
2,867,976	+		Rv2545	0.69	+1.0
2,867,976	+		Rv2545	0.69	+0.6
2,867,977	-		Rv2545	0.70	-0.4
2,867,977	-		Rv2545	0.70	-0.4
2,867,977	-		Rv2545	0.70	+1.3
2,867,977	-		Rv2545	0.70	-0.1
2,867,977	-		Rv2545	0.70	-0.5
2,867,977	-		Rv2545	0.70	-1.0
2,868,007	+		Rv2545	0.80	-0.4
2,868,305	-		Rv2546	0.36	-0.6
2,868,305	-		Rv2546	0.36	-0.2
2,868,305	-		Rv2546	0.36	+0.3
2,868,343	-		Rv2546	0.46	-0.7
2,868,344	+		Rv2546	0.46	-0.3
2,868,345	-		Rv2546	0.46	-0.3
2,868,502	+		Rv2546	0.84	+1.0
2,868,502	+		Rv2546	0.84	+1.1
2,868,502	+		Rv2546	0.84	-0.5
2,868,502	+		Rv2546	0.84	-0.4
2,868,503	-		Rv2546	0.84	-0.1
2,868,503	-		Rv2546	0.84	-0.5
2,868,534	+				-1.8
2,868,534	+				-0.6
2,868,534	+				-0.7
2,868,594	+				-1.8
2,868,594	+				-0.1
2,868,939	+		Rv2548	0.21	-0.8
2,869,139	+		Rv2548	0.74	-0.1
2,869,140	-		Rv2548	0.74	-0.7
2,869,233	-				-1.6
2,869,702	-				-0.6
2,869,740	-				+0.1
2,869,782	+		Rv2549c	0.14	-0.1
2,869,782	+		Rv2549c	0.14	-0.2
2,869,782	+		Rv2549c	0.14	-0.2
2,869,782	+		Rv2549c	0.14	-0.1
2,869,782	+		Rv2549c	0.14	-0.9
2,869,783	-		Rv2549c	0.14	-0.4
2,869,783	-		Rv2549c	0.14	+1.1
2,869,783	-		Rv2549c	0.14	-0.3
2,869,783	-		Rv2549c	0.14	-0.7
2,869,901	+		Rv2549c	0.44	+0.2
2,869,901	+		Rv2549c	0.44	-0.2
2,869,901	+		Rv2549c	0.44	-2.2
2,869,901	+		Rv2549c	0.44	+0.9