Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1829

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
2,073,830	-				+0.2
2,074,004	+		Rv1829	0.12	-1.1
2,074,031	-		Rv1829	0.18	-0.0
2,074,224	+		Rv1829	0.57	-1.5
2,074,224	+		Rv1829	0.57	-1.8
2,074,224	+		Rv1829	0.57	-0.4
2,074,225	-		Rv1829	0.57	-1.4
2,074,288	+		Rv1829	0.70	-0.4
2,074,289	-		Rv1829	0.70	-0.3
2,074,305	-		Rv1829	0.73	-1.2
2,074,435	+				+0.8
2,074,436	-				+0.1
2,074,484	+				-0.7
2,074,484	+				-0.4
2,074,485	-				-0.2
2,074,485	-				+0.0
2,074,485	-				-0.3
2,074,644	-				-2.2
2,074,719	-				-3.0
2,074,739	+				-0.2
2,074,762	+				-0.0
2,074,793	+				+0.1
2,074,793	+				+1.8
2,074,794	-				-1.0
2,074,794	-				-1.0
2,074,802	+				-1.1
2,074,820	+				-2.4
2,074,820	+				+0.2
2,074,851	+				-1.5