Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1676

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,900,180	+				+0.2
1,900,180	+				+0.2
1,900,183	+				-0.5
1,900,183	+				-0.9
1,900,259	+				-0.2
1,900,547	+		Rv1675c	0.42	+0.8
1,900,721	+		Rv1675c	0.65	-0.4
1,901,164	+		Rv1676	0.17	-0.6
1,901,165	-		Rv1676	0.17	-0.4
1,901,170	-		Rv1676	0.17	-0.8
1,901,181	+		Rv1676	0.19	-0.8
1,901,467	+		Rv1676	0.60	-0.2
1,901,668	+		Rv1676	0.88	-0.4
1,901,778	-				-0.8
1,901,783	-				-0.4
1,902,088	+		Rv1677	0.62	-0.7
1,902,117	+		Rv1677	0.67	-0.7
1,902,512	-		Rv1678	0.13	+0.4
1,902,568	+		Rv1678	0.19	-0.9
1,902,569	-		Rv1678	0.19	+0.1
1,902,569	-		Rv1678	0.19	-0.9