Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1647

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,855,795	+				-0.9
1,855,795	+				-0.0
1,855,935	+		Rv1646	0.18	-0.6
1,855,935	+		Rv1646	0.18	+0.0
1,855,935	+		Rv1646	0.18	-0.5
1,855,935	+		Rv1646	0.18	-1.1
1,855,936	-		Rv1646	0.18	-0.6
1,855,936	-		Rv1646	0.18	+0.0
1,855,936	-		Rv1646	0.18	+2.4
1,855,983	-		Rv1646	0.23	+0.2
1,856,181	-		Rv1646	0.45	+1.6
1,856,334	+		Rv1646	0.61	-0.4
1,856,350	+		Rv1646	0.63	-1.2
1,856,350	+		Rv1646	0.63	-0.3
1,856,432	-		Rv1646	0.72	+0.2
1,856,539	-		Rv1646	0.83	-3.6
1,856,625	-				-1.4
1,856,651	+				-0.4
1,856,652	-				-0.4
1,856,694	+				+0.6
1,856,695	-				-0.4
1,856,798	+				-0.3
1,856,799	-				-0.6
1,856,799	-				+1.8
1,856,799	-				-0.4
1,856,799	-				+0.8
1,856,880	+		Rv1647	0.11	-1.1
1,856,901	+		Rv1647	0.13	-1.0
1,856,901	+		Rv1647	0.13	-0.8
1,856,901	+		Rv1647	0.13	-0.7
1,857,397	-		Rv1647	0.66	-0.8
1,857,402	-		Rv1647	0.66	-0.2
1,857,403	+		Rv1647	0.66	-1.2
1,857,403	+		Rv1647	0.66	-1.6
1,857,404	-		Rv1647	0.66	-0.2
1,857,601	+		Rv1647	0.87	+0.5
1,857,602	-		Rv1647	0.87	+0.2
1,857,653	+				+0.9
1,857,653	+				+0.3
1,857,670	+				-0.9
1,857,723	-				+0.8
1,857,738	-				-0.5
1,857,782	+				-0.8
1,857,783	-				+0.4
1,857,783	-				+1.8
1,857,866	-		Rv1648	0.17	-0.3
1,858,136	+		Rv1648	0.50	-0.1
1,858,136	+		Rv1648	0.50	-2.3
1,858,137	-		Rv1648	0.50	-0.5
1,858,137	-		Rv1648	0.50	+0.4
1,858,137	-		Rv1648	0.50	+1.1
1,858,137	-		Rv1648	0.50	-0.8
1,858,137	-		Rv1648	0.50	-0.8
1,858,297	-		Rv1648	0.70	-0.6
1,858,394	-		Rv1648	0.82	-0.6
1,858,528	-				-0.3
1,858,579	+				-0.2
1,858,580	-				-0.0
1,858,621	+				+0.3
1,858,621	+				+0.4
1,858,670	+				-1.2