Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1645c

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,853,662	-				-1.3
1,853,662	-				-0.5
1,853,662	-				-1.7
1,853,745	+		Rv1644	0.18	-0.9
1,853,745	+		Rv1644	0.18	+0.3
1,853,746	-		Rv1644	0.18	-0.0
1,853,848	+		Rv1644	0.31	-0.3
1,853,849	-		Rv1644	0.31	+0.0
1,853,910	+		Rv1644	0.39	-0.2
1,853,910	+		Rv1644	0.39	+0.3
1,853,910	+		Rv1644	0.39	+0.8
1,853,910	+		Rv1644	0.39	-0.0
1,853,911	-		Rv1644	0.39	-1.3
1,853,980	-		Rv1644	0.48	-0.5
1,854,044	+		Rv1644	0.56	-0.5
1,854,044	+		Rv1644	0.56	-0.7
1,854,044	+		Rv1644	0.56	+1.3
1,854,044	+		Rv1644	0.56	-0.6
1,854,045	-		Rv1644	0.56	-0.4
1,854,045	-		Rv1644	0.56	-0.3
1,854,291	+		Rv1644	0.87	-1.3
1,854,291	+		Rv1644	0.87	-0.2
1,854,291	+		Rv1644	0.87	+0.2
1,854,292	-		Rv1644	0.88	+0.2
1,854,292	-		Rv1644	0.88	-1.3
1,854,356	+				-0.4
1,854,357	-				-0.1
1,854,401	-				-0.9
1,854,541	+		Rv1645c	0.13	+0.1
1,854,541	+		Rv1645c	0.13	-0.4
1,854,541	+		Rv1645c	0.13	-0.5
1,854,541	+		Rv1645c	0.13	-1.6
1,854,542	-		Rv1645c	0.14	-0.0
1,854,621	-		Rv1645c	0.21	+0.7
1,854,702	+		Rv1645c	0.29	-0.5
1,854,816	+		Rv1645c	0.39	-0.2
1,854,817	-		Rv1645c	0.40	-1.0
1,854,819	+		Rv1645c	0.40	-0.3
1,854,861	+		Rv1645c	0.44	-0.5
1,854,862	-		Rv1645c	0.44	-1.4
1,854,862	-		Rv1645c	0.44	-0.1
1,854,862	-		Rv1645c	0.44	+0.2
1,854,949	+		Rv1645c	0.52	+1.0
1,854,949	+		Rv1645c	0.52	+0.1
1,854,949	+		Rv1645c	0.52	+1.4
1,854,950	-		Rv1645c	0.52	-0.4
1,855,000	+		Rv1645c	0.57	-0.3
1,855,000	+		Rv1645c	0.57	-0.4
1,855,000	+		Rv1645c	0.57	-0.6
1,855,000	+		Rv1645c	0.57	+0.1
1,855,073	-		Rv1645c	0.64	-0.2
1,855,120	+		Rv1645c	0.68	-0.4
1,855,120	+		Rv1645c	0.68	-0.6
1,855,120	+		Rv1645c	0.68	+0.9
1,855,121	-		Rv1645c	0.68	+0.3
1,855,121	-		Rv1645c	0.68	+0.1
1,855,127	+		Rv1645c	0.69	-0.1
1,855,127	+		Rv1645c	0.69	-0.6
1,855,128	-		Rv1645c	0.69	+0.1
1,855,128	-		Rv1645c	0.69	-0.6
1,855,148	-		Rv1645c	0.71	-0.2
1,855,234	+		Rv1645c	0.79	-0.2
1,855,235	-		Rv1645c	0.79	+0.1
1,855,235	-		Rv1645c	0.79	+0.1
1,855,235	-		Rv1645c	0.79	+1.8
1,855,235	-		Rv1645c	0.79	-0.1
1,855,235	-		Rv1645c	0.79	+0.2
1,855,255	+		Rv1645c	0.81	-0.6
1,855,255	+		Rv1645c	0.81	+0.4
1,855,255	+		Rv1645c	0.81	-1.2
1,855,324	-		Rv1645c	0.88	+1.7
1,855,333	+		Rv1645c	0.88	+0.1
1,855,333	+		Rv1645c	0.88	+0.4
1,855,333	+		Rv1645c	0.88	+0.2
1,855,333	+		Rv1645c	0.88	+1.8
1,855,334	-		Rv1645c	0.89	-0.1
1,855,337	+		Rv1645c	0.89	+1.2
1,855,337	+		Rv1645c	0.89	-0.3
1,855,337	+		Rv1645c	0.89	-0.6
1,855,337	+		Rv1645c	0.89	-1.6
1,855,338	-		Rv1645c	0.89	+1.8
1,855,338	-		Rv1645c	0.89	-0.1
1,855,338	-		Rv1645c	0.89	-0.2
1,855,338	-		Rv1645c	0.89	-0.2
1,855,393	+				+2.4
1,855,490	+				-0.6
1,855,490	+				-2.0
1,855,490	+				-0.2
1,855,490	+				-0.5
1,855,598	+				-2.7
1,855,598	+				-0.0
1,855,599	-				-0.1
1,855,599	-				-0.1
1,855,599	-				-0.9
1,855,599	-				-0.2
1,855,599	-				-0.3
1,855,599	-				+1.8
1,855,651	+				-0.7
1,855,651	+				-0.8
1,855,652	-				-0.4
1,855,652	-				+0.7
1,855,671	-				-0.1
1,855,671	-				+0.6
1,855,675	-				+1.5
1,855,675	-				-0.5
1,855,690	-				-0.2
1,855,690	-				-0.3
1,855,721	-				-0.5
1,855,739	+				-1.0
1,855,748	+				+0.2
1,855,748	+				-0.6
1,855,749	-				+0.0
1,855,749	-				-0.8
1,855,749	-				+0.2
1,855,764	-				+0.3
1,855,764	-				-1.3
1,855,795	+				-0.9
1,855,795	+				-0.0
1,855,935	+		Rv1646	0.18	-0.6
1,855,935	+		Rv1646	0.18	+0.0
1,855,935	+		Rv1646	0.18	-0.5
1,855,935	+		Rv1646	0.18	-1.1
1,855,936	-		Rv1646	0.18	-0.6
1,855,936	-		Rv1646	0.18	+0.0
1,855,936	-		Rv1646	0.18	+2.4
1,855,983	-		Rv1646	0.23	+0.2
1,856,181	-		Rv1646	0.45	+1.6
1,856,334	+		Rv1646	0.61	-0.4
1,856,350	+		Rv1646	0.63	-1.2
1,856,350	+		Rv1646	0.63	-0.3
1,856,432	-		Rv1646	0.72	+0.2