Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1590

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,790,427	-		Rv1589	0.14	-1.6
1,790,609	+		Rv1589	0.31	-1.1
1,790,610	-		Rv1589	0.31	-1.5
1,790,827	+		Rv1589	0.52	-1.8
1,790,827	+		Rv1589	0.52	+0.1
1,791,084	-		Rv1589	0.76	-1.5
1,791,084	-		Rv1589	0.76	+1.8
1,791,241	+				-1.4
1,791,241	+				-1.4
1,791,242	-				-0.0
1,791,242	-				-1.7
1,791,242	-				-2.8
1,791,296	+				-0.8
1,791,296	+				-2.7
1,791,296	+				-2.5
1,791,296	+				-1.5
1,791,296	+				-1.0
1,791,297	-				+0.2
1,791,297	-				-1.5
1,791,297	-				-1.5
1,791,297	-				-1.6
1,791,297	-				-1.6
1,791,297	-				-1.1
1,791,297	-				-1.2
1,791,331	+				-0.4
1,791,386	-		Rv1590	0.22	-1.7
1,791,394	+		Rv1590	0.25	-3.1
1,791,414	+		Rv1590	0.33	-1.7
1,791,766	-		Rv1591	0.29	+2.2
1,791,766	-		Rv1591	0.29	+0.2
1,791,766	-		Rv1591	0.29	-0.8
1,791,806	+		Rv1591	0.35	-0.4
1,791,807	-		Rv1591	0.36	-0.2
1,792,026	+		Rv1591	0.68	-1.0
1,792,027	-		Rv1591	0.69	-0.4
1,792,027	-		Rv1591	0.69	-0.3
1,792,118	-		Rv1591	0.82	-0.5
1,792,197	-				-0.1
1,792,197	-				+0.2
1,792,234	-				+0.2