Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1581c

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,783,129	+		Rv1578c	0.79	+0.7
1,783,258	-				-0.4
1,783,351	-		Rv1579c	0.13	+0.2
1,783,480	-		Rv1579c	0.54	+1.4
1,783,480	-		Rv1579c	0.54	-0.3
1,783,783	+		Rv1580c	0.60	+0.0
1,783,783	+		Rv1580c	0.60	-1.5
1,783,783	+		Rv1580c	0.60	-0.2
1,783,783	+		Rv1580c	0.60	-0.3
1,783,784	-		Rv1580c	0.60	+0.9
1,783,920	+				-0.3
1,783,920	+				-0.4
1,784,198	+		Rv1581c	0.74	-0.8
1,784,199	-		Rv1581c	0.74	+0.2
1,784,199	-		Rv1581c	0.74	-0.8
1,784,244	-		Rv1581c	0.85	-0.9
1,784,369	-				+1.2
1,784,369	-				-1.2
1,784,489	+				-0.4
1,784,673	+		Rv1582c	0.12	-0.2
1,784,673	+		Rv1582c	0.12	-0.1
1,784,674	-		Rv1582c	0.12	-0.0
1,784,677	-		Rv1582c	0.13	+0.0
1,784,732	-		Rv1582c	0.17	-1.3
1,784,753	+		Rv1582c	0.18	-0.6