Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1533

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,732,707	+		Rv1531	0.41	-0.8
1,732,791	+		Rv1531	0.56	-0.2
1,732,939	+		Rv1531	0.82	-1.5
1,733,118	-				-1.2
1,733,557	+				-0.5
1,733,557	+				-0.8
1,733,557	+				+0.3
1,733,558	-				-1.0
1,733,653	+				-0.4
1,733,736	-		Rv1533	0.11	-0.5
1,733,826	+		Rv1533	0.19	-0.3
1,733,826	+		Rv1533	0.19	+1.1
1,733,826	+		Rv1533	0.19	+0.6
1,733,995	-		Rv1533	0.34	+1.8
1,734,822	+		Rv1534	0.13	-0.7
1,734,909	-		Rv1534	0.26	-0.0
1,735,048	-		Rv1534	0.46	-1.8
1,735,096	-		Rv1534	0.53	-0.1
1,735,113	-		Rv1534	0.56	-1.0
1,735,154	+		Rv1534	0.62	+0.0
1,735,244	+		Rv1534	0.75	-0.5
1,735,428	-				+0.6
1,735,486	+				+1.8
1,735,509	+				-0.1
1,735,544	+				-1.7
1,735,544	+				-1.0
1,735,545	-				-0.6
1,735,545	-				-0.5
1,735,545	-				-0.6
1,735,545	-				-0.2
1,735,545	-				+1.3
1,735,602	+				+0.8
1,735,704	+				-2.2
1,735,704	+				-0.3
1,735,704	+				-0.9
1,735,722	+				-2.0