Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1400c

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,574,851	+				+0.2
1,574,935	+				-0.5
1,574,964	+		Rv1399c	0.12	-0.3
1,575,004	+		Rv1399c	0.16	-1.0
1,575,142	+		Rv1399c	0.30	-0.0
1,575,142	+		Rv1399c	0.30	-1.2
1,575,142	+		Rv1399c	0.30	+0.2
1,575,142	+		Rv1399c	0.30	-0.5
1,575,142	+		Rv1399c	0.30	+0.3
1,575,143	-		Rv1399c	0.31	-0.6
1,575,550	+		Rv1399c	0.73	-0.4
1,575,595	+		Rv1399c	0.78	+0.4
1,575,654	+		Rv1399c	0.84	+0.3
1,575,749	+				-1.3
1,575,820	+				-0.1
1,575,821	-				-0.1
1,575,821	-				+0.8
1,575,844	-				+0.0
1,576,121	-		Rv1400c	0.30	-0.8
1,576,873	+				-0.4
1,577,281	+		Rv1401	0.58	+2.8
1,577,281	+		Rv1401	0.58	-0.1
1,577,520	+				+1.2
1,577,520	+				-0.3