Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1344

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,508,072	-		Rv1341	0.81	+0.6
1,508,186	-				-0.1
1,508,186	-				-0.1
1,508,586	-		Rv1343c	0.11	-0.5
1,508,985	-				-1.0
1,509,020	+		Rv1344	0.16	-0.3
1,509,021	-		Rv1344	0.17	-0.9
1,509,021	-		Rv1344	0.17	-1.0
1,509,063	+		Rv1344	0.30	-1.3
1,509,391	-				-0.8
1,509,426	+				-0.5
1,509,544	-		Rv1345	0.17	+0.4
1,509,616	-		Rv1345	0.21	-0.1
1,509,616	-		Rv1345	0.21	-0.3
1,509,632	+		Rv1345	0.22	-0.6
1,509,633	-		Rv1345	0.22	-0.7
1,509,659	-		Rv1345	0.24	-0.7
1,509,880	-		Rv1345	0.38	-1.3
1,510,061	+		Rv1345	0.50	+2.8
1,510,062	-		Rv1345	0.50	-1.1
1,510,205	+		Rv1345	0.59	-0.4