Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1335

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,502,140	+		Rv1333	0.52	+0.4
1,502,141	-		Rv1333	0.52	-0.6
1,502,197	+		Rv1333	0.58	+0.1
1,502,198	-		Rv1333	0.58	-1.0
1,502,257	+		Rv1333	0.64	+0.3
1,502,258	-		Rv1333	0.64	-0.4
1,502,598	+				-0.9
1,502,598	+				-0.1
1,502,599	-				-0.4
1,502,599	-				+0.4
1,502,599	-				-1.6
1,502,599	-				-1.1
1,502,665	+				-2.2
1,502,665	+				+0.5
1,502,666	-				-1.3
1,502,666	-				-0.5
1,502,666	-				-0.1
1,502,666	-				-0.6
1,502,787	+		Rv1334	0.33	-0.6
1,502,788	-		Rv1334	0.33	+0.1
1,502,824	+		Rv1334	0.41	+0.6
1,502,824	+		Rv1334	0.41	-0.7
1,502,899	+		Rv1334	0.59	+1.1
1,502,900	-		Rv1334	0.59	-1.0
1,502,927	-		Rv1334	0.65	-1.0
1,502,974	+		Rv1334	0.76	+0.2
1,502,974	+		Rv1334	0.76	-2.1
1,502,975	-		Rv1334	0.76	+0.2
1,502,975	-		Rv1334	0.76	-1.6
1,502,975	-		Rv1334	0.76	-0.5
1,503,014	+		Rv1334	0.85	-1.9
1,503,014	+		Rv1334	0.85	-1.7
1,503,014	+		Rv1334	0.85	-1.1
1,503,022	+		Rv1334	0.86	-0.3
1,503,023	-		Rv1334	0.87	+0.6
1,503,076	+				-1.3
1,503,076	+				+1.8
1,503,116	+				+2.2
1,503,116	+				-0.8
1,503,117	-				+0.7
1,503,217	+		Rv1335	0.40	-0.3
1,503,262	-		Rv1335	0.56	-1.1
1,503,286	+		Rv1335	0.65	-1.0
1,503,286	+		Rv1335	0.65	-0.1
1,503,286	+		Rv1335	0.65	-0.8
1,503,286	+		Rv1335	0.65	-1.0
1,503,286	+		Rv1335	0.65	-0.5
1,503,287	-		Rv1335	0.65	-0.3
1,503,287	-		Rv1335	0.65	-1.1
1,503,287	-		Rv1335	0.65	-0.6
1,503,753	+		Rv1336	0.37	-0.9
1,503,842	-		Rv1336	0.46	+1.3
1,503,842	-		Rv1336	0.46	-0.5
1,503,848	-		Rv1336	0.47	+0.3
1,503,877	+		Rv1336	0.50	+0.8
1,503,878	-		Rv1336	0.50	-2.4
1,503,941	+		Rv1336	0.56	-0.5
1,503,941	+		Rv1336	0.56	-2.3
1,504,040	+		Rv1336	0.66	-0.6
1,504,040	+		Rv1336	0.66	-0.7
1,504,042	+		Rv1336	0.67	-0.6
1,504,042	+		Rv1336	0.67	-1.0
1,504,042	+		Rv1336	0.67	-1.3
1,504,084	+		Rv1336	0.71	-1.2
1,504,084	+		Rv1336	0.71	-0.8
1,504,085	-		Rv1336	0.71	+1.8
1,504,085	-		Rv1336	0.71	-0.2
1,504,085	-		Rv1336	0.71	-0.9
1,504,085	-		Rv1336	0.71	-0.2
1,504,085	-		Rv1336	0.71	-1.5
1,504,112	-		Rv1336	0.74	-0.3
1,504,291	+				-1.5
1,504,291	+				+0.9
1,504,291	+				-1.8
1,504,309	+				-0.3
1,504,355	+				-0.7
1,504,355	+				+0.5
1,504,355	+				-2.2
1,504,355	+				-0.8