Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1200

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,342,697	+				+3.4
1,342,707	+				-2.0
1,342,707	+				-0.3
1,342,726	+				-0.7
1,342,861	+				-1.3
1,342,861	+				-0.7
1,342,878	-				-0.5
1,343,006	-				-0.0
1,343,109	-		Rv1200	0.13	-0.6
1,343,440	+		Rv1200	0.39	-0.3
1,343,440	+		Rv1200	0.39	+1.8
1,343,440	+		Rv1200	0.39	-0.5
1,343,441	-		Rv1200	0.39	-0.7
1,343,441	-		Rv1200	0.39	-0.6
1,343,441	-		Rv1200	0.39	-0.4
1,343,529	-		Rv1200	0.46	-0.9
1,343,529	-		Rv1200	0.46	-1.8
1,343,530	+		Rv1200	0.46	+0.0
1,343,530	+		Rv1200	0.46	+1.8
1,343,530	+		Rv1200	0.46	-0.5
1,343,530	+		Rv1200	0.46	-1.0
1,343,530	+		Rv1200	0.46	+0.1
1,343,531	-		Rv1200	0.46	-0.7
1,343,531	-		Rv1200	0.46	-1.2
1,343,651	+		Rv1200	0.55	-1.5
1,343,652	-		Rv1200	0.56	-0.2
1,343,652	-		Rv1200	0.56	+0.0
1,343,723	-		Rv1200	0.61	+0.1
1,343,723	-		Rv1200	0.61	+0.1
1,343,723	-		Rv1200	0.61	+0.0
1,343,743	+		Rv1200	0.63	+0.8
1,343,876	+		Rv1200	0.73	-0.4
1,343,953	+		Rv1200	0.79	+0.2
1,343,953	+		Rv1200	0.79	+0.3
1,343,954	-		Rv1200	0.79	-0.9
1,343,954	-		Rv1200	0.79	-0.5
1,343,954	-		Rv1200	0.79	-0.5
1,343,954	-		Rv1200	0.79	+0.5
1,344,019	+		Rv1200	0.84	-0.2
1,344,077	+		Rv1200	0.89	-0.7
1,344,112	+				+0.2
1,344,112	+				-0.6
1,344,113	-				-0.3
1,344,113	-				+1.0
1,344,167	+				-0.8
1,344,168	-				-0.3
1,344,168	-				-0.3
1,344,168	-				-0.5
1,344,176	-				-0.1
1,344,217	+				-0.4
1,345,172	+				+0.2
1,345,172	+				-0.4
1,345,173	-				-1.4
1,345,173	-				-0.7
1,345,206	-				-0.4
1,345,206	-				-0.3
1,345,206	-				-0.2