Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0960

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
1,072,893	+		Rv0959	0.81	-0.1
1,073,339	+				-0.2
1,073,339	+				-0.1
1,073,782	-		Rv0960	0.62	-2.3
1,073,825	-		Rv0960	0.73	-1.5
1,073,825	-		Rv0960	0.73	-0.3
1,073,825	-		Rv0960	0.73	-0.7
1,073,825	-		Rv0960	0.73	-0.3
1,073,957	+				-0.6
1,073,971	-				-0.2
1,074,146	+		Rv0961	0.21	+0.2
1,074,146	+		Rv0961	0.21	-0.3
1,074,146	+		Rv0961	0.21	-1.5
1,074,147	-		Rv0961	0.21	-0.7
1,074,192	+		Rv0961	0.34	-0.1
1,074,192	+		Rv0961	0.34	-0.5
1,074,245	+		Rv0961	0.49	-0.3
1,074,392	+				-0.1
1,074,393	-				+0.8
1,074,393	-				+1.4
1,074,445	-				+0.6
1,074,478	-				-0.3
1,074,478	-				-0.8
1,074,576	+		Rv0962c	0.20	-0.5
1,074,576	+		Rv0962c	0.20	-1.2
1,074,577	-		Rv0962c	0.20	+0.3
1,074,577	-		Rv0962c	0.20	+0.4
1,074,577	-		Rv0962c	0.20	-1.3
1,074,582	+		Rv0962c	0.21	-0.5
1,074,620	+		Rv0962c	0.27	-0.4
1,074,791	+		Rv0962c	0.52	-0.4
1,074,791	+		Rv0962c	0.52	+0.2
1,074,791	+		Rv0962c	0.52	-0.3