Experiment: 7H9 with hypochlorite 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0836c and Rv0837c are separated by 70 nucleotides Rv0837c and Rv0838 are separated by 688 nucleotides
Rv0836c: Rv0836c - Hypothetical protein, at 932,279 to 932,932
Rv0836c
Rv0837c: Rv0837c - Hypothetical protein, at 933,003 to 934,031
Rv0837c
Rv0838: Rv0838 - Probable conserved lipoprotein LpqR, at 934,720 to 935,490
Rv0838
Position (kb) 933
934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 932.052 kb on + strand at 932.073 kb on + strand at 932.140 kb on + strand at 932.164 kb on + strand at 932.165 kb on - strand at 932.186 kb on + strand at 932.187 kb on - strand at 932.187 kb on - strand at 932.211 kb on + strand at 932.212 kb on - strand at 932.420 kb on + strand, within Rv0836c at 932.420 kb on + strand, within Rv0836c at 932.420 kb on + strand, within Rv0836c at 932.490 kb on + strand, within Rv0836c at 932.529 kb on + strand, within Rv0836c at 932.529 kb on + strand, within Rv0836c at 932.530 kb on - strand, within Rv0836c at 932.580 kb on + strand, within Rv0836c at 932.580 kb on + strand, within Rv0836c at 932.581 kb on - strand, within Rv0836c at 932.581 kb on - strand, within Rv0836c at 932.646 kb on + strand, within Rv0836c at 932.903 kb on + strand at 933.091 kb on + strand at 933.198 kb on + strand, within Rv0837c at 933.198 kb on + strand, within Rv0837c at 933.199 kb on - strand, within Rv0837c at 933.201 kb on - strand, within Rv0837c at 933.241 kb on + strand, within Rv0837c at 933.242 kb on - strand, within Rv0837c at 933.242 kb on - strand, within Rv0837c at 933.242 kb on - strand, within Rv0837c at 933.479 kb on + strand, within Rv0837c at 933.479 kb on + strand, within Rv0837c at 933.480 kb on - strand, within Rv0837c at 933.480 kb on - strand, within Rv0837c at 933.480 kb on - strand, within Rv0837c at 933.480 kb on - strand, within Rv0837c at 933.480 kb on - strand, within Rv0837c at 933.500 kb on + strand, within Rv0837c at 933.603 kb on - strand, within Rv0837c at 933.718 kb on + strand, within Rv0837c at 933.719 kb on - strand, within Rv0837c at 933.743 kb on - strand, within Rv0837c at 933.874 kb on + strand, within Rv0837c at 933.874 kb on + strand, within Rv0837c at 933.874 kb on + strand, within Rv0837c at 933.875 kb on - strand, within Rv0837c at 933.875 kb on - strand, within Rv0837c at 933.918 kb on + strand, within Rv0837c at 933.919 kb on - strand, within Rv0837c at 933.951 kb on + strand at 934.086 kb on + strand at 934.119 kb on - strand at 934.458 kb on - strand at 934.458 kb on - strand at 934.465 kb on + strand at 934.465 kb on + strand at 934.466 kb on - strand at 934.854 kb on - strand, within Rv0838
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with hypochlorite 0.4 vol% remove 932,052 + -1.1 932,073 + -0.6 932,140 + -0.2 932,164 + -1.7 932,165 - -0.6 932,186 + -0.4 932,187 - -0.5 932,187 - +0.1 932,211 + +0.1 932,212 - -3.0 932,420 + Rv0836c 0.22 +0.1 932,420 + Rv0836c 0.22 +0.8 932,420 + Rv0836c 0.22 +1.8 932,490 + Rv0836c 0.32 +0.2 932,529 + Rv0836c 0.38 +0.8 932,529 + Rv0836c 0.38 +0.0 932,530 - Rv0836c 0.38 -0.1 932,580 + Rv0836c 0.46 -0.2 932,580 + Rv0836c 0.46 +1.8 932,581 - Rv0836c 0.46 +1.3 932,581 - Rv0836c 0.46 +1.8 932,646 + Rv0836c 0.56 -0.2 932,903 + +0.0 933,091 + -0.9 933,198 + Rv0837c 0.19 -0.5 933,198 + Rv0837c 0.19 +1.5 933,199 - Rv0837c 0.19 -1.2 933,201 - Rv0837c 0.19 -0.1 933,241 + Rv0837c 0.23 -0.2 933,242 - Rv0837c 0.23 -0.7 933,242 - Rv0837c 0.23 -1.7 933,242 - Rv0837c 0.23 -1.1 933,479 + Rv0837c 0.46 -0.4 933,479 + Rv0837c 0.46 -0.1 933,480 - Rv0837c 0.46 -0.3 933,480 - Rv0837c 0.46 -0.4 933,480 - Rv0837c 0.46 -0.3 933,480 - Rv0837c 0.46 -0.3 933,480 - Rv0837c 0.46 -0.4 933,500 + Rv0837c 0.48 -0.3 933,603 - Rv0837c 0.58 -2.0 933,718 + Rv0837c 0.69 -0.2 933,719 - Rv0837c 0.70 -0.6 933,743 - Rv0837c 0.72 -0.3 933,874 + Rv0837c 0.85 -0.3 933,874 + Rv0837c 0.85 -0.8 933,874 + Rv0837c 0.85 -1.3 933,875 - Rv0837c 0.85 -0.6 933,875 - Rv0837c 0.85 -0.6 933,918 + Rv0837c 0.89 -1.2 933,919 - Rv0837c 0.89 -0.2 933,951 + -0.4 934,086 + -0.7 934,119 - +0.5 934,458 - +0.3 934,458 - -0.7 934,465 + -0.4 934,465 + -0.9 934,466 - -1.1 934,854 - Rv0838 0.17 -0.5
Or see this region's nucleotide sequence