Experiment: 7H9 with hypochlorite 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0173 and Rv0174 overlap by 7 nucleotides Rv0174 and Rv0175 are separated by 35 nucleotides Rv0175 and Rv0176 overlap by 4 nucleotides
Rv0173: Rv0173 - Possible Mce-family lipoprotein LprK (Mce-family lipoprotein Mce1E), at 204,065 to 205,237
Rv0173
Rv0174: Rv0174 - Mce-family protein Mce1F, at 205,231 to 206,778
Rv0174
Rv0175: Rv0175 - Probable conserved Mce associated membrane protein, at 206,814 to 207,455
Rv0175
Rv0176: Rv0176 - Probable conserved Mce associated transmembrane protein, at 207,452 to 208,420
Rv0176
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.691 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.774 kb on + strand, within Rv0173 at 204.838 kb on - strand, within Rv0173 at 204.950 kb on + strand, within Rv0173 at 204.950 kb on + strand, within Rv0173 at 204.951 kb on - strand, within Rv0173 at 205.028 kb on + strand, within Rv0173 at 205.029 kb on - strand, within Rv0173 at 205.029 kb on - strand, within Rv0173 at 205.062 kb on - strand, within Rv0173 at 205.062 kb on - strand, within Rv0173 at 205.212 kb on + strand at 205.213 kb on - strand at 205.309 kb on + strand at 205.313 kb on - strand at 205.313 kb on - strand at 205.388 kb on - strand, within Rv0174 at 205.416 kb on + strand, within Rv0174 at 205.588 kb on + strand, within Rv0174 at 205.588 kb on + strand, within Rv0174 at 205.589 kb on - strand, within Rv0174 at 205.589 kb on - strand, within Rv0174 at 206.063 kb on - strand, within Rv0174 at 206.180 kb on - strand, within Rv0174 at 206.269 kb on + strand, within Rv0174 at 206.269 kb on + strand, within Rv0174 at 206.270 kb on - strand, within Rv0174 at 206.377 kb on - strand, within Rv0174 at 206.387 kb on - strand, within Rv0174 at 206.387 kb on - strand, within Rv0174 at 206.623 kb on - strand, within Rv0174 at 206.623 kb on - strand, within Rv0174 at 206.636 kb on - strand at 206.711 kb on - strand at 206.711 kb on - strand at 206.795 kb on + strand at 206.808 kb on - strand at 207.420 kb on + strand at 207.422 kb on + strand at 207.423 kb on - strand at 207.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with hypochlorite 0.4 vol% remove 204,691 + Rv0173 0.53 -0.1 204,728 + Rv0173 0.57 -0.6 204,728 + Rv0173 0.57 -0.8 204,728 + Rv0173 0.57 -0.9 204,728 + Rv0173 0.57 -1.4 204,774 + Rv0173 0.60 -0.1 204,838 - Rv0173 0.66 +0.2 204,950 + Rv0173 0.75 -0.4 204,950 + Rv0173 0.75 +1.8 204,951 - Rv0173 0.76 -0.2 205,028 + Rv0173 0.82 +2.2 205,029 - Rv0173 0.82 -0.9 205,029 - Rv0173 0.82 -1.2 205,062 - Rv0173 0.85 +0.9 205,062 - Rv0173 0.85 -1.0 205,212 + +0.8 205,213 - +1.8 205,309 + -1.5 205,313 - +1.3 205,313 - -1.4 205,388 - Rv0174 0.10 -0.4 205,416 + Rv0174 0.12 -1.2 205,588 + Rv0174 0.23 -0.1 205,588 + Rv0174 0.23 -0.3 205,589 - Rv0174 0.23 +0.8 205,589 - Rv0174 0.23 -1.6 206,063 - Rv0174 0.54 -1.3 206,180 - Rv0174 0.61 -0.7 206,269 + Rv0174 0.67 -0.9 206,269 + Rv0174 0.67 -1.0 206,270 - Rv0174 0.67 -1.8 206,377 - Rv0174 0.74 +1.0 206,387 - Rv0174 0.75 -1.2 206,387 - Rv0174 0.75 -0.6 206,623 - Rv0174 0.90 -1.0 206,623 - Rv0174 0.90 -1.0 206,636 - +0.5 206,711 - -2.2 206,711 - -0.3 206,795 + -0.5 206,808 - -0.5 207,420 + -0.4 207,422 + +0.2 207,423 - -0.5 207,423 - +0.8
Or see this region's nucleotide sequence