Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0106

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
123,521	-		Rv0104	0.79	-0.4
123,522	+		Rv0104	0.80	-0.7
123,612	+		Rv0104	0.85	-1.2
123,830	-				+0.3
123,896	+				+1.9
123,896	+				+0.5
123,906	+				+0.2
123,906	+				-1.1
123,910	+				-0.3
123,910	+				-0.7
123,910	+				-1.1
123,911	-				-0.2
123,911	-				-0.4
123,911	-				-0.1
123,911	-				-0.3
123,911	-				-0.7
124,379	+				-0.6
124,390	+				+0.1
124,391	-				+1.9
125,015	+		Rv0106	0.54	-0.9
125,293	-		Rv0106	0.77	-2.2
125,293	-		Rv0106	0.77	+0.3
125,293	-		Rv0106	0.77	-0.3
125,377	+		Rv0106	0.84	-0.4
125,470	-				+0.0
125,605	+				-0.3
125,606	-				+0.0
125,620	+				-0.2
125,644	+				-1.7
125,666	+				-0.6