Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0093c

Experiment: 7H9 with hypochlorite 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0092 and Rv0093c overlap by 54 nucleotidesRv0093c and Rv0094c are separated by 46 nucleotides Rv0092: Rv0092 - Cation transporter P-type ATPase a CtpA, at 100,583 to 102,868 Rv0092 Rv0093c: Rv0093c - Probable conserved membrane protein, at 102,815 to 103,663 Rv0093c Rv0094c: Rv0094c - Conserved hypothetical protein, at 103,710 to 104,663 Rv0094c Position (kb) 102 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1at 101.851 kb on - strand, within Rv0092at 102.531 kb on + strand, within Rv0092at 102.613 kb on - strand, within Rv0092at 103.405 kb on + strand, within Rv0093cat 103.534 kb on + strand, within Rv0093c

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with hypochlorite 0.4 vol%
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101,851 - Rv0092 0.55 -0.1
102,531 + Rv0092 0.85 +1.7
102,613 - Rv0092 0.89 +0.1
103,405 + Rv0093c 0.69 -2.8
103,534 + Rv0093c 0.85 +0.4

Or see this region's nucleotide sequence