Experiment: 7H9 with Nickel (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0489 and Rv0490 are separated by 173 nucleotides Rv0490 and Rv0491 are separated by 227 nucleotides Rv0491 and Rv0492c overlap by 4 nucleotides
Rv0489: Rv0489 - Probable phosphoglycerate mutase 1 Gpm1 (phosphoglyceromutase) (PGAM) (BPG-dependent PGAM), at 578,426 to 579,175
Rv0489
Rv0490: Rv0490 - Putative two component sensor histidine kinase SenX3, at 579,349 to 580,581
Rv0490
Rv0491: Rv0491 - Two component sensory transduction protein RegX3 (transcriptional regulatory protein) (probably LuxR-family), at 580,809 to 581,492
Rv0491
Rv0492c: Rv0492c - Probable oxidoreductase GMC-type, at 581,489 to 583,378
Rv0492c
Position (kb) 579
580
581 Strain fitness (log2 ratio) -2
-1
0
1
2 at 579.173 kb on + strand at 579.174 kb on - strand at 579.277 kb on + strand at 579.278 kb on - strand at 579.569 kb on - strand, within Rv0490 at 579.569 kb on - strand, within Rv0490 at 579.593 kb on + strand, within Rv0490 at 579.594 kb on - strand, within Rv0490 at 579.719 kb on + strand, within Rv0490 at 580.033 kb on - strand, within Rv0490 at 580.411 kb on - strand, within Rv0490 at 580.496 kb on - strand at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 581.100 kb on + strand, within Rv0491 at 581.368 kb on - strand, within Rv0491 at 581.475 kb on + strand at 581.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Nickel (II) chloride 0.6 mM remove 579,173 + +0.1 579,174 - -0.5 579,277 + -0.5 579,278 - -0.3 579,569 - Rv0490 0.18 +0.4 579,569 - Rv0490 0.18 -0.4 579,593 + Rv0490 0.20 +1.8 579,594 - Rv0490 0.20 +1.5 579,719 + Rv0490 0.30 +0.1 580,033 - Rv0490 0.55 -0.3 580,411 - Rv0490 0.86 +1.4 580,496 - +0.3 580,996 + Rv0491 0.27 +0.3 580,996 + Rv0491 0.27 +0.1 580,996 + Rv0491 0.27 -1.6 580,996 + Rv0491 0.27 -0.0 580,996 + Rv0491 0.27 -0.2 580,997 - Rv0491 0.27 +0.5 580,997 - Rv0491 0.27 +0.0 580,997 - Rv0491 0.27 -0.5 580,997 - Rv0491 0.27 -0.4 580,997 - Rv0491 0.27 -0.1 581,100 + Rv0491 0.43 -1.0 581,368 - Rv0491 0.82 -0.3 581,475 + -1.8 581,528 + -1.0
Or see this region's nucleotide sequence