Experiment: 7H9 with Nickel (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0078 and Rv0078A are separated by 74 nucleotides Rv0078A and Rv0078B overlap by 4 nucleotides Rv0078B and Rv0079 are separated by 199 nucleotides
Rv0078: Rv0078 - Probable transcriptional regulatory protein, at 86,528 to 87,133
Rv0078
Rv0078A: Rv0078A - Hypothetical protein, at 87,208 to 87,801
Rv0078A
Rv0078B: Rv0078B - Conserved protein, at 87,798 to 88,004
Rv0078B
Rv0079: Rv0079 - Unknown protein, at 88,204 to 89,025
Rv0079
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 86.836 kb on - strand, within Rv0078 at 86.925 kb on - strand, within Rv0078 at 87.125 kb on - strand at 87.276 kb on + strand, within Rv0078A at 87.289 kb on - strand, within Rv0078A at 87.343 kb on + strand, within Rv0078A at 87.605 kb on + strand, within Rv0078A at 87.606 kb on - strand, within Rv0078A at 87.632 kb on - strand, within Rv0078A at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 88.233 kb on - strand at 88.233 kb on - strand at 88.280 kb on + strand at 88.440 kb on - strand, within Rv0079 at 88.631 kb on + strand, within Rv0079 at 88.681 kb on + strand, within Rv0079 at 88.682 kb on - strand, within Rv0079 at 88.732 kb on + strand, within Rv0079 at 88.779 kb on - strand, within Rv0079 at 88.779 kb on - strand, within Rv0079 at 88.954 kb on + strand at 88.954 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Nickel (II) chloride 0.6 mM remove 86,836 - Rv0078 0.51 -0.9 86,925 - Rv0078 0.66 +1.0 87,125 - +0.1 87,276 + Rv0078A 0.11 -0.3 87,289 - Rv0078A 0.14 -0.6 87,343 + Rv0078A 0.23 -0.5 87,605 + Rv0078A 0.67 -1.3 87,606 - Rv0078A 0.67 -0.3 87,632 - Rv0078A 0.71 -0.6 87,955 + Rv0078B 0.76 -1.0 87,955 + Rv0078B 0.76 -0.4 87,955 + Rv0078B 0.76 -0.8 87,955 + Rv0078B 0.76 -0.5 87,955 + Rv0078B 0.76 -2.5 88,233 - -0.4 88,233 - +3.6 88,280 + +1.8 88,440 - Rv0079 0.29 +0.3 88,631 + Rv0079 0.52 +0.0 88,681 + Rv0079 0.58 -0.8 88,682 - Rv0079 0.58 -0.1 88,732 + Rv0079 0.64 -0.6 88,779 - Rv0079 0.70 -0.2 88,779 - Rv0079 0.70 +1.1 88,954 + +0.3 88,954 + +0.2
Or see this region's nucleotide sequence