Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3700c and Rv3701c are separated by 30 nucleotides Rv3701c and Rv3702c overlap by 4 nucleotides Rv3702c and Rv3703c overlap by 1 nucleotides
Rv3700c: Rv3700c - Conserved hypothetical protein, at 4,142,748 to 4,143,920
Rv3700c
Rv3701c: Rv3701c - Conserved hypothetical protein, at 4,143,951 to 4,144,916
Rv3701c
Rv3702c: Rv3702c - Conserved hypothetical protein, at 4,144,913 to 4,145,614
Rv3702c
Rv3703c: Rv3703c - Conserved hypothetical protein, at 4,145,614 to 4,146,891
Rv3703c
Position (kb)
4144
4145
4146 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4145.019 kb on + strand, within Rv3702c at 4145.527 kb on - strand, within Rv3702c at 4145.774 kb on + strand, within Rv3703c at 4145.774 kb on + strand, within Rv3703c at 4145.775 kb on - strand, within Rv3703c at 4145.927 kb on + strand, within Rv3703c at 4145.927 kb on + strand, within Rv3703c at 4145.928 kb on - strand, within Rv3703c at 4145.928 kb on - strand, within Rv3703c at 4146.069 kb on - strand, within Rv3703c at 4146.225 kb on - strand, within Rv3703c at 4146.225 kb on - strand, within Rv3703c at 4146.463 kb on + strand, within Rv3703c at 4146.464 kb on - strand, within Rv3703c at 4146.596 kb on + strand, within Rv3703c
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 4,145,019 + Rv3702c 0.15 -0.7 4,145,527 - Rv3702c 0.87 -1.0 4,145,774 + Rv3703c 0.13 -0.3 4,145,774 + Rv3703c 0.13 +2.3 4,145,775 - Rv3703c 0.13 -0.2 4,145,927 + Rv3703c 0.24 -0.7 4,145,927 + Rv3703c 0.24 -0.3 4,145,928 - Rv3703c 0.25 +0.7 4,145,928 - Rv3703c 0.25 +0.2 4,146,069 - Rv3703c 0.36 +0.3 4,146,225 - Rv3703c 0.48 -0.3 4,146,225 - Rv3703c 0.48 +0.1 4,146,463 + Rv3703c 0.66 -3.3 4,146,464 - Rv3703c 0.67 -1.1 4,146,596 + Rv3703c 0.77 -1.1
Or see this region's nucleotide sequence