Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0194

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0193c and Rv0194 are separated by 306 nucleotidesRv0194 and Rv0195 are separated by 436 nucleotides Rv0193c: Rv0193c - Hypothetical protein, at 224,724 to 226,571 Rv0193c Rv0194: Rv0194 - Probable transmembrane multidrug efflux pump, at 226,878 to 230,462 Rv0194 Rv0195: Rv0195 - Possible two component transcriptional regulatory protein (probably LuxR-family), at 230,899 to 231,534 Rv0195 Position (kb) 226 227 228 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2 3at 225.909 kb on - strand, within Rv0193cat 225.923 kb on - strand, within Rv0193cat 225.923 kb on - strand, within Rv0193cat 225.923 kb on - strand, within Rv0193cat 226.125 kb on + strand, within Rv0193cat 226.177 kb on + strand, within Rv0193cat 226.178 kb on - strand, within Rv0193cat 226.270 kb on - strand, within Rv0193cat 226.270 kb on - strand, within Rv0193cat 226.352 kb on - strand, within Rv0193cat 226.369 kb on - strand, within Rv0193cat 226.447 kb on + strandat 226.448 kb on - strandat 226.636 kb on - strandat 226.911 kb on + strandat 226.912 kb on - strandat 227.011 kb on + strandat 227.088 kb on + strandat 227.088 kb on + strandat 227.089 kb on - strandat 227.089 kb on - strandat 227.100 kb on + strandat 227.100 kb on + strandat 227.100 kb on + strandat 227.101 kb on - strandat 227.101 kb on - strandat 227.101 kb on - strandat 227.104 kb on + strandat 227.104 kb on + strandat 227.104 kb on + strandat 227.105 kb on - strandat 227.105 kb on - strandat 227.105 kb on - strandat 227.105 kb on - strandat 227.115 kb on + strandat 227.140 kb on + strandat 227.311 kb on + strand, within Rv0194at 227.312 kb on - strand, within Rv0194at 227.312 kb on - strand, within Rv0194at 227.314 kb on + strand, within Rv0194at 227.314 kb on + strand, within Rv0194at 227.314 kb on + strand, within Rv0194at 227.314 kb on + strand, within Rv0194at 227.314 kb on + strand, within Rv0194at 227.314 kb on + strand, within Rv0194at 227.315 kb on - strand, within Rv0194at 227.315 kb on - strand, within Rv0194at 227.315 kb on - strand, within Rv0194at 227.563 kb on - strand, within Rv0194at 227.563 kb on - strand, within Rv0194at 227.563 kb on - strand, within Rv0194at 227.563 kb on - strand, within Rv0194at 227.687 kb on + strand, within Rv0194at 227.688 kb on - strand, within Rv0194at 227.688 kb on - strand, within Rv0194at 227.904 kb on + strand, within Rv0194at 227.905 kb on - strand, within Rv0194at 227.935 kb on + strand, within Rv0194at 227.935 kb on + strand, within Rv0194at 227.936 kb on - strand, within Rv0194at 227.936 kb on - strand, within Rv0194at 228.028 kb on - strand, within Rv0194at 228.166 kb on - strand, within Rv0194at 228.473 kb on + strand, within Rv0194at 228.473 kb on + strand, within Rv0194at 228.474 kb on - strand, within Rv0194at 228.474 kb on - strand, within Rv0194at 228.474 kb on - strand, within Rv0194at 228.830 kb on + strand, within Rv0194at 228.907 kb on + strand, within Rv0194at 228.908 kb on + strand, within Rv0194at 228.908 kb on + strand, within Rv0194at 228.908 kb on + strand, within Rv0194at 228.909 kb on - strand, within Rv0194at 228.909 kb on - strand, within Rv0194at 228.909 kb on - strand, within Rv0194at 228.949 kb on - strand, within Rv0194at 229.306 kb on - strand, within Rv0194at 229.420 kb on + strand, within Rv0194at 229.432 kb on - strand, within Rv0194at 229.536 kb on + strand, within Rv0194at 229.536 kb on + strand, within Rv0194at 229.536 kb on + strand, within Rv0194at 229.536 kb on + strand, within Rv0194at 229.537 kb on - strand, within Rv0194at 229.537 kb on - strand, within Rv0194at 229.537 kb on - strand, within Rv0194at 229.545 kb on + strand, within Rv0194at 229.546 kb on - strand, within Rv0194at 229.546 kb on - strand, within Rv0194at 229.560 kb on + strand, within Rv0194at 229.560 kb on + strand, within Rv0194at 229.560 kb on + strand, within Rv0194at 229.722 kb on + strand, within Rv0194at 229.722 kb on + strand, within Rv0194at 229.722 kb on + strand, within Rv0194at 229.723 kb on - strand, within Rv0194at 229.854 kb on + strand, within Rv0194at 229.854 kb on + strand, within Rv0194at 229.854 kb on + strand, within Rv0194at 229.855 kb on - strand, within Rv0194at 229.855 kb on - strand, within Rv0194at 229.855 kb on - strand, within Rv0194at 229.957 kb on - strand, within Rv0194at 229.957 kb on - strand, within Rv0194at 229.957 kb on - strand, within Rv0194at 229.992 kb on + strand, within Rv0194at 229.992 kb on + strand, within Rv0194at 229.993 kb on - strand, within Rv0194at 230.082 kb on + strand, within Rv0194at 230.083 kb on - strand, within Rv0194at 230.083 kb on - strand, within Rv0194at 230.389 kb on - strandat 230.450 kb on + strandat 230.450 kb on + strandat 230.460 kb on + strandat 230.460 kb on + strandat 230.461 kb on - strandat 230.585 kb on - strandat 230.709 kb on + strandat 231.071 kb on + strand, within Rv0195at 231.071 kb on + strand, within Rv0195at 231.072 kb on - strand, within Rv0195at 231.196 kb on + strand, within Rv0195at 231.383 kb on + strand, within Rv0195at 231.427 kb on + strand, within Rv0195at 231.428 kb on - strand, within Rv0195

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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225,909 - Rv0193c 0.64 -0.6
225,923 - Rv0193c 0.65 -0.1
225,923 - Rv0193c 0.65 -1.0
225,923 - Rv0193c 0.65 -1.1
226,125 + Rv0193c 0.76 -0.1
226,177 + Rv0193c 0.79 -1.0
226,178 - Rv0193c 0.79 +0.5
226,270 - Rv0193c 0.84 -0.8
226,270 - Rv0193c 0.84 -1.1
226,352 - Rv0193c 0.88 +0.9
226,369 - Rv0193c 0.89 -0.1
226,447 + +0.1
226,448 - +0.5
226,636 - -0.5
226,911 + -1.5
226,912 - -0.5
227,011 + +0.0
227,088 + -0.6
227,088 + +0.9
227,089 - -0.3
227,089 - +0.3
227,100 + -0.3
227,100 + +0.0
227,100 + +0.2
227,101 - -0.7
227,101 - -1.0
227,101 - +0.1
227,104 + -1.0
227,104 + -0.4
227,104 + +0.2
227,105 - -0.1
227,105 - +1.9
227,105 - +0.5
227,105 - +2.9
227,115 + -0.3
227,140 + -0.7
227,311 + Rv0194 0.12 -1.0
227,312 - Rv0194 0.12 -1.8
227,312 - Rv0194 0.12 +1.1
227,314 + Rv0194 0.12 +0.4
227,314 + Rv0194 0.12 +0.4
227,314 + Rv0194 0.12 -0.1
227,314 + Rv0194 0.12 -0.2
227,314 + Rv0194 0.12 +0.3
227,314 + Rv0194 0.12 -0.1
227,315 - Rv0194 0.12 -0.1
227,315 - Rv0194 0.12 +0.9
227,315 - Rv0194 0.12 -0.6
227,563 - Rv0194 0.19 -0.6
227,563 - Rv0194 0.19 +0.3
227,563 - Rv0194 0.19 -0.5
227,563 - Rv0194 0.19 -0.0
227,687 + Rv0194 0.23 +0.0
227,688 - Rv0194 0.23 -0.4
227,688 - Rv0194 0.23 -0.6
227,904 + Rv0194 0.29 -1.4
227,905 - Rv0194 0.29 -1.0
227,935 + Rv0194 0.29 -0.5
227,935 + Rv0194 0.29 -0.9
227,936 - Rv0194 0.30 -0.4
227,936 - Rv0194 0.30 +0.6
228,028 - Rv0194 0.32 +0.2
228,166 - Rv0194 0.36 +0.4
228,473 + Rv0194 0.44 +0.2
228,473 + Rv0194 0.44 +0.1
228,474 - Rv0194 0.45 +0.3
228,474 - Rv0194 0.45 -0.6
228,474 - Rv0194 0.45 -0.2
228,830 + Rv0194 0.54 -0.2
228,907 + Rv0194 0.57 +0.8
228,908 + Rv0194 0.57 -0.1
228,908 + Rv0194 0.57 +1.4
228,908 + Rv0194 0.57 +0.9
228,909 - Rv0194 0.57 -0.3
228,909 - Rv0194 0.57 -0.0
228,909 - Rv0194 0.57 +0.3
228,949 - Rv0194 0.58 +0.3
229,306 - Rv0194 0.68 -0.2
229,420 + Rv0194 0.71 -0.3
229,432 - Rv0194 0.71 +0.6
229,536 + Rv0194 0.74 +0.0
229,536 + Rv0194 0.74 +0.0
229,536 + Rv0194 0.74 +1.0
229,536 + Rv0194 0.74 -0.7
229,537 - Rv0194 0.74 +2.9
229,537 - Rv0194 0.74 +1.9
229,537 - Rv0194 0.74 +1.9
229,545 + Rv0194 0.74 +1.2
229,546 - Rv0194 0.74 +0.5
229,546 - Rv0194 0.74 +1.9
229,560 + Rv0194 0.75 +0.9
229,560 + Rv0194 0.75 +0.9
229,560 + Rv0194 0.75 +0.1
229,722 + Rv0194 0.79 +0.4
229,722 + Rv0194 0.79 +0.5
229,722 + Rv0194 0.79 -0.4
229,723 - Rv0194 0.79 -0.5
229,854 + Rv0194 0.83 +0.9
229,854 + Rv0194 0.83 -0.7
229,854 + Rv0194 0.83 -0.9
229,855 - Rv0194 0.83 -0.5
229,855 - Rv0194 0.83 -0.9
229,855 - Rv0194 0.83 -0.8
229,957 - Rv0194 0.86 +1.1
229,957 - Rv0194 0.86 +0.1
229,957 - Rv0194 0.86 +1.9
229,992 + Rv0194 0.87 +2.9
229,992 + Rv0194 0.87 -0.2
229,993 - Rv0194 0.87 +0.0
230,082 + Rv0194 0.89 -1.0
230,083 - Rv0194 0.89 -0.7
230,083 - Rv0194 0.89 -0.1
230,389 - +0.8
230,450 + +0.1
230,450 + -0.3
230,460 + +1.9
230,460 + -0.7
230,461 - +0.2
230,585 - -0.2
230,709 + -0.9
231,071 + Rv0195 0.27 -0.7
231,071 + Rv0195 0.27 -0.1
231,072 - Rv0195 0.27 +0.9
231,196 + Rv0195 0.47 +1.9
231,383 + Rv0195 0.76 -0.2
231,427 + Rv0195 0.83 -0.5
231,428 - Rv0195 0.83 -0.6

Or see this region's nucleotide sequence