Experiment: 7H9 with Sisomicin 0.07 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0677c and Rv0678 are separated by 84 nucleotides Rv0678 and Rv0679c are separated by 55 nucleotides Rv0679c and Rv0680c are separated by 1 nucleotides Rv0680c and Rv0681 are separated by 304 nucleotides
Rv0677c: Rv0677c - Possible conserved membrane protein MmpS5, at 778,477 to 778,905
Rv0677c
Rv0678: Rv0678 - Conserved protein, at 778,990 to 779,487
Rv0678
Rv0679c: Rv0679c - Conserved threonine rich protein, at 779,543 to 780,040
Rv0679c
Rv0680c: Rv0680c - Probable conserved transmembrane protein, at 780,042 to 780,416
Rv0680c
Rv0681: Rv0681 - Probable transcriptional regulatory protein (possibly TetR-family), at 780,721 to 781,311
Rv0681
Position (kb) 779
780
781 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 778.694 kb on + strand, within Rv0677c at 778.709 kb on + strand, within Rv0677c at 778.714 kb on - strand, within Rv0677c at 778.977 kb on + strand at 779.263 kb on + strand, within Rv0678 at 779.264 kb on - strand, within Rv0678 at 779.264 kb on - strand, within Rv0678 at 779.264 kb on - strand, within Rv0678 at 779.422 kb on + strand, within Rv0678 at 779.422 kb on + strand, within Rv0678 at 779.423 kb on - strand, within Rv0678 at 779.423 kb on - strand, within Rv0678 at 779.423 kb on - strand, within Rv0678 at 779.423 kb on - strand, within Rv0678 at 779.424 kb on + strand, within Rv0678 at 779.424 kb on + strand, within Rv0678 at 779.424 kb on + strand, within Rv0678 at 779.424 kb on + strand, within Rv0678 at 779.425 kb on - strand, within Rv0678 at 779.459 kb on - strand at 779.797 kb on - strand, within Rv0679c at 779.914 kb on + strand, within Rv0679c at 780.066 kb on + strand at 780.066 kb on + strand at 780.066 kb on + strand at 780.075 kb on + strand at 780.075 kb on + strand at 780.076 kb on - strand at 780.076 kb on - strand at 780.142 kb on + strand, within Rv0680c at 780.143 kb on - strand, within Rv0680c at 780.482 kb on + strand at 780.482 kb on + strand at 780.482 kb on + strand at 780.483 kb on - strand at 780.483 kb on - strand at 780.483 kb on - strand at 780.574 kb on - strand at 780.582 kb on + strand at 780.582 kb on + strand at 780.583 kb on - strand at 780.583 kb on - strand at 780.583 kb on - strand at 780.854 kb on - strand, within Rv0681 at 780.854 kb on - strand, within Rv0681 at 780.854 kb on - strand, within Rv0681 at 780.881 kb on + strand, within Rv0681 at 780.881 kb on + strand, within Rv0681 at 780.998 kb on - strand, within Rv0681 at 780.998 kb on - strand, within Rv0681
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sisomicin 0.07 mM remove 778,694 + Rv0677c 0.51 -0.2 778,709 + Rv0677c 0.54 +0.9 778,714 - Rv0677c 0.55 -1.1 778,977 + +0.0 779,263 + Rv0678 0.55 -0.5 779,264 - Rv0678 0.55 +0.5 779,264 - Rv0678 0.55 -0.6 779,264 - Rv0678 0.55 +0.4 779,422 + Rv0678 0.87 -1.2 779,422 + Rv0678 0.87 +0.0 779,423 - Rv0678 0.87 -0.9 779,423 - Rv0678 0.87 +0.5 779,423 - Rv0678 0.87 +1.1 779,423 - Rv0678 0.87 -2.2 779,424 + Rv0678 0.87 +4.0 779,424 + Rv0678 0.87 -1.1 779,424 + Rv0678 0.87 -2.4 779,424 + Rv0678 0.87 +0.8 779,425 - Rv0678 0.87 -0.1 779,459 - -0.2 779,797 - Rv0679c 0.51 -1.5 779,914 + Rv0679c 0.74 -0.9 780,066 + +1.6 780,066 + -0.4 780,066 + +0.9 780,075 + -0.5 780,075 + -1.4 780,076 - +0.2 780,076 - +0.5 780,142 + Rv0680c 0.27 -0.8 780,143 - Rv0680c 0.27 -0.2 780,482 + -0.2 780,482 + -0.7 780,482 + -0.2 780,483 - +0.1 780,483 - -0.3 780,483 - -2.5 780,574 - -0.5 780,582 + -0.4 780,582 + +0.0 780,583 - -2.1 780,583 - -1.4 780,583 - -0.4 780,854 - Rv0681 0.23 +0.1 780,854 - Rv0681 0.23 -0.2 780,854 - Rv0681 0.23 +0.7 780,881 + Rv0681 0.27 +0.9 780,881 + Rv0681 0.27 -0.5 780,998 - Rv0681 0.47 +0.7 780,998 - Rv0681 0.47 -0.5
Or see this region's nucleotide sequence