Experiment: 7H9 with Sisomicin 0.07 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0549c and Rv0550c overlap by 4 nucleotides Rv0550c and Rv0551c are separated by 191 nucleotides Rv0551c and Rv0552 are separated by 77 nucleotides
Rv0549c: Rv0549c - Possible toxin VapC3, at 640,228 to 640,641
Rv0549c
Rv0550c: Rv0550c - Possible antitoxin VapB3, at 640,638 to 640,904
Rv0550c
Rv0551c: Rv0551c - Probable fatty-acid-CoA ligase FadD8 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 641,096 to 642,811
Rv0551c
Rv0552: Rv0552 - Conserved protein, at 642,889 to 644,493
Rv0552
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1
2 at 640.178 kb on + strand at 640.179 kb on - strand at 640.179 kb on - strand at 640.436 kb on + strand, within Rv0549c at 640.437 kb on - strand, within Rv0549c at 640.576 kb on + strand, within Rv0549c at 640.837 kb on + strand, within Rv0550c at 640.838 kb on - strand, within Rv0550c at 641.049 kb on - strand at 641.049 kb on - strand at 641.162 kb on + strand at 641.163 kb on - strand at 641.463 kb on + strand, within Rv0551c at 641.463 kb on + strand, within Rv0551c at 641.463 kb on + strand, within Rv0551c at 641.464 kb on - strand, within Rv0551c at 641.466 kb on + strand, within Rv0551c at 641.466 kb on + strand, within Rv0551c at 641.467 kb on - strand, within Rv0551c at 641.467 kb on - strand, within Rv0551c at 641.712 kb on + strand, within Rv0551c at 641.712 kb on + strand, within Rv0551c at 641.748 kb on + strand, within Rv0551c at 641.821 kb on - strand, within Rv0551c at 642.045 kb on - strand, within Rv0551c at 642.239 kb on + strand, within Rv0551c at 642.239 kb on + strand, within Rv0551c at 642.397 kb on - strand, within Rv0551c at 642.556 kb on - strand, within Rv0551c at 642.565 kb on + strand, within Rv0551c at 642.779 kb on + strand at 642.779 kb on + strand at 642.823 kb on - strand at 642.823 kb on - strand at 643.342 kb on + strand, within Rv0552 at 643.411 kb on + strand, within Rv0552 at 643.411 kb on + strand, within Rv0552 at 643.487 kb on + strand, within Rv0552
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sisomicin 0.07 mM remove 640,178 + -0.4 640,179 - -0.6 640,179 - -0.3 640,436 + Rv0549c 0.50 +0.6 640,437 - Rv0549c 0.50 +0.0 640,576 + Rv0549c 0.84 +0.1 640,837 + Rv0550c 0.75 -0.9 640,838 - Rv0550c 0.75 -1.8 641,049 - -0.6 641,049 - -1.4 641,162 + +0.8 641,163 - -0.6 641,463 + Rv0551c 0.21 +0.0 641,463 + Rv0551c 0.21 +0.2 641,463 + Rv0551c 0.21 +0.4 641,464 - Rv0551c 0.21 -0.1 641,466 + Rv0551c 0.22 -0.4 641,466 + Rv0551c 0.22 +0.5 641,467 - Rv0551c 0.22 -0.2 641,467 - Rv0551c 0.22 +0.7 641,712 + Rv0551c 0.36 -1.9 641,712 + Rv0551c 0.36 +0.5 641,748 + Rv0551c 0.38 +2.1 641,821 - Rv0551c 0.42 +0.6 642,045 - Rv0551c 0.55 +1.7 642,239 + Rv0551c 0.67 -0.6 642,239 + Rv0551c 0.67 +2.7 642,397 - Rv0551c 0.76 -0.6 642,556 - Rv0551c 0.85 -0.2 642,565 + Rv0551c 0.86 -0.0 642,779 + +0.1 642,779 + +0.5 642,823 - -0.2 642,823 - +1.0 643,342 + Rv0552 0.28 +1.7 643,411 + Rv0552 0.33 -0.4 643,411 + Rv0552 0.33 +0.9 643,487 + Rv0552 0.37 +0.3
Or see this region's nucleotide sequence