Experiment: 7H9 with Sisomicin 0.07 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0291 and Rv0292 overlap by 4 nucleotides Rv0292 and Rv0293c overlap by 14 nucleotides Rv0293c and Rv0294 are separated by 106 nucleotides Rv0294 and Rv0295c overlap by 12 nucleotides
Rv0291: Rv0291 - Probable membrane-anchored mycosin MycP3 (serine protease) (subtilisin-like protease) (subtilase-like) (mycosin-3), at 354,498 to 355,883
Rv0291
Rv0292: Rv0292 - ESX conserved component EccE3. ESX-3 type VII secretion system protein. Probable transmembrane protein., at 355,880 to 356,875
Rv0292
Rv0293c: Rv0293c - Conserved protein, at 356,862 to 358,064
Rv0293c
Rv0294: Rv0294 - Probable trans-aconitate methyltransferase Tam, at 358,171 to 358,956
Rv0294
Rv0295c: Rv0295c - Conserved protein, at 358,945 to 359,748
Rv0295c
Position (kb) 356
357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 356.818 kb on + strand at 356.818 kb on + strand at 356.818 kb on + strand at 357.050 kb on + strand, within Rv0293c at 357.050 kb on + strand, within Rv0293c at 357.054 kb on + strand, within Rv0293c at 357.055 kb on - strand, within Rv0293c at 357.085 kb on + strand, within Rv0293c at 357.152 kb on + strand, within Rv0293c at 357.153 kb on - strand, within Rv0293c at 357.153 kb on - strand, within Rv0293c at 357.259 kb on + strand, within Rv0293c at 357.275 kb on + strand, within Rv0293c at 357.275 kb on + strand, within Rv0293c at 357.276 kb on - strand, within Rv0293c at 357.340 kb on + strand, within Rv0293c at 357.340 kb on + strand, within Rv0293c at 357.452 kb on - strand, within Rv0293c at 357.481 kb on + strand, within Rv0293c at 357.517 kb on + strand, within Rv0293c at 357.518 kb on - strand, within Rv0293c at 357.554 kb on + strand, within Rv0293c at 357.555 kb on - strand, within Rv0293c at 357.844 kb on - strand, within Rv0293c at 358.168 kb on + strand at 358.168 kb on + strand at 358.168 kb on + strand at 358.168 kb on + strand at 358.168 kb on + strand at 358.169 kb on - strand at 358.169 kb on - strand at 358.169 kb on - strand at 358.169 kb on - strand at 358.307 kb on - strand, within Rv0294 at 358.619 kb on + strand, within Rv0294 at 358.726 kb on + strand, within Rv0294 at 358.727 kb on - strand, within Rv0294 at 358.884 kb on + strand at 358.885 kb on - strand at 358.955 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sisomicin 0.07 mM remove 356,818 + -0.4 356,818 + +0.1 356,818 + +0.0 357,050 + Rv0293c 0.16 -1.2 357,050 + Rv0293c 0.16 -0.2 357,054 + Rv0293c 0.16 -2.3 357,055 - Rv0293c 0.16 +0.1 357,085 + Rv0293c 0.19 -1.4 357,152 + Rv0293c 0.24 -0.6 357,153 - Rv0293c 0.24 -2.4 357,153 - Rv0293c 0.24 -0.2 357,259 + Rv0293c 0.33 -0.3 357,275 + Rv0293c 0.34 -1.2 357,275 + Rv0293c 0.34 -0.0 357,276 - Rv0293c 0.34 +0.0 357,340 + Rv0293c 0.40 -0.1 357,340 + Rv0293c 0.40 -0.6 357,452 - Rv0293c 0.49 -2.2 357,481 + Rv0293c 0.51 -0.9 357,517 + Rv0293c 0.54 -0.3 357,518 - Rv0293c 0.55 -0.7 357,554 + Rv0293c 0.58 +0.4 357,555 - Rv0293c 0.58 +0.1 357,844 - Rv0293c 0.82 -2.0 358,168 + -0.3 358,168 + -1.2 358,168 + +1.7 358,168 + -0.1 358,168 + -0.0 358,169 - +0.1 358,169 - +2.5 358,169 - -0.2 358,169 - -1.0 358,307 - Rv0294 0.17 -0.6 358,619 + Rv0294 0.57 -1.0 358,726 + Rv0294 0.71 +0.1 358,727 - Rv0294 0.71 -0.4 358,884 + -0.4 358,885 - +0.2 358,955 - +0.1
Or see this region's nucleotide sequence