Experiment: 7H9 with Sisomicin 0.07 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0206c and Rv0207c are separated by 65 nucleotides Rv0207c and Rv0208c are separated by 2 nucleotides Rv0208c and Rv0209 are separated by 131 nucleotides
Rv0206c: Rv0206c - Possible conserved transmembrane transport protein MmpL3, at 244,484 to 247,318
Rv0206c
Rv0207c: Rv0207c - Conserved hypothetical protein, at 247,384 to 248,112
Rv0207c
Rv0208c: Rv0208c - Hypothetical methlytransferase (methylase), at 248,115 to 248,906
Rv0208c
Rv0209: Rv0209 - Hypothetical protein, at 249,038 to 250,123
Rv0209
Position (kb) 248
249 Strain fitness (log2 ratio) -2
-1
0
1
2 at 247.723 kb on + strand, within Rv0207c at 247.724 kb on - strand, within Rv0207c at 247.724 kb on - strand, within Rv0207c at 248.053 kb on + strand at 248.120 kb on + strand at 248.206 kb on + strand, within Rv0208c at 248.206 kb on + strand, within Rv0208c at 248.311 kb on + strand, within Rv0208c at 248.392 kb on - strand, within Rv0208c at 248.581 kb on + strand, within Rv0208c at 248.734 kb on - strand, within Rv0208c at 248.862 kb on + strand at 248.863 kb on - strand at 249.282 kb on - strand, within Rv0209 at 249.436 kb on + strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.619 kb on - strand, within Rv0209
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sisomicin 0.07 mM remove 247,723 + Rv0207c 0.47 -1.3 247,724 - Rv0207c 0.47 +0.8 247,724 - Rv0207c 0.47 -1.0 248,053 + -0.7 248,120 + -2.5 248,206 + Rv0208c 0.11 +0.7 248,206 + Rv0208c 0.11 +0.2 248,311 + Rv0208c 0.25 -0.6 248,392 - Rv0208c 0.35 +1.5 248,581 + Rv0208c 0.59 -1.1 248,734 - Rv0208c 0.78 +1.9 248,862 + -1.2 248,863 - -0.9 249,282 - Rv0209 0.22 -0.7 249,436 + Rv0209 0.37 -0.2 249,437 - Rv0209 0.37 +0.4 249,437 - Rv0209 0.37 +1.5 249,619 - Rv0209 0.53 -1.6
Or see this region's nucleotide sequence