Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2801A

Experiment: 7H9 with nitrate 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrate 4 mM
3,109,515	-		Rv2800	0.67	-0.5
3,109,624	-		Rv2800	0.73	-0.2
3,109,769	+		Rv2800	0.82	-0.1
3,109,770	-		Rv2800	0.82	-0.2
3,109,956	-				+0.3
3,110,168	+				+1.5
3,110,168	+				+0.1
3,110,168	+				+2.0
3,110,169	-				+0.5
3,110,169	-				+0.2
3,110,176	+				+0.8
3,110,176	+				+0.1
3,110,177	-				+1.1
3,110,177	-				-2.2
3,110,177	-				-1.7
3,110,317	-		Rv2801c	0.42	+0.5
3,110,472	+		Rv2801c	0.85	+0.8
3,110,598	+		Rv2801A	0.39	+0.3
3,110,599	-		Rv2801A	0.40	+1.3
3,110,620	-		Rv2801A	0.49	+1.1
3,110,685	+		Rv2801A	0.77	+0.2
3,110,685	+		Rv2801A	0.77	-0.8
3,110,962	+		Rv2802c	0.17	-2.2
3,111,207	+		Rv2802c	0.41	+0.0
3,111,207	+		Rv2802c	0.41	+1.8
3,111,214	+		Rv2802c	0.42	-0.3
3,111,567	+		Rv2802c	0.75	-0.2
3,111,656	+		Rv2802c	0.84	-0.2
3,111,656	+		Rv2802c	0.84	+0.4
3,111,656	+		Rv2802c	0.84	-1.3
3,111,656	+		Rv2802c	0.84	+0.2
3,111,657	-		Rv2802c	0.84	-0.3