Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1675c

Experiment: 7H9 with nitrate 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrate 4 mM
1,899,369	+		Rv1674c	0.17	-0.0
1,899,659	+		Rv1674c	0.61	+1.3
1,899,660	-		Rv1674c	0.61	-0.3
1,899,690	+		Rv1674c	0.65	-0.8
1,899,950	-				-0.1
1,900,180	+				-0.8
1,900,180	+				+1.2
1,900,183	+				-0.8
1,900,183	+				-0.3
1,900,259	+				-0.7
1,900,547	+		Rv1675c	0.42	-1.7
1,900,721	+		Rv1675c	0.65	-0.7
1,901,164	+		Rv1676	0.17	-0.5
1,901,165	-		Rv1676	0.17	+0.1
1,901,170	-		Rv1676	0.17	-0.1
1,901,181	+		Rv1676	0.19	-1.2
1,901,467	+		Rv1676	0.60	-0.2
1,901,668	+		Rv1676	0.88	-0.1
1,901,778	-				+0.1
1,901,783	-				-0.1