Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1517

Experiment: 7H9 with nitrate 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrate 4 mM
1,708,217	-		Rv1516c	0.68	+0.0
1,708,217	-		Rv1516c	0.68	+2.8
1,708,238	+		Rv1516c	0.70	-0.4
1,708,571	+				+0.0
1,708,571	+				-0.1
1,708,664	-				-1.7
1,708,665	+				+0.1
1,708,753	+				+0.2
1,708,855	-				-0.1
1,708,857	+				+0.5
1,708,858	-				-0.3
1,708,858	-				+0.9
1,709,064	+		Rv1517	0.25	-0.2
1,709,064	+		Rv1517	0.25	-1.5
1,709,064	+		Rv1517	0.25	+0.0
1,709,064	+		Rv1517	0.25	-0.4
1,709,065	-		Rv1517	0.25	-0.4
1,709,065	-		Rv1517	0.25	-0.3
1,709,065	-		Rv1517	0.25	-2.4
1,709,300	-		Rv1517	0.56	-0.7
1,709,495	+		Rv1517	0.82	-0.8
1,709,550	+		Rv1517	0.89	-2.4
1,709,612	+				-0.4
1,709,626	+				+0.2
1,709,698	-				+0.6
1,709,755	-		Rv1518	0.12	+0.8
1,709,755	-		Rv1518	0.12	-0.1
1,709,938	-		Rv1518	0.31	-0.2
1,710,243	+		Rv1518	0.62	-0.2
1,710,244	-		Rv1518	0.62	-0.2
1,710,247	+		Rv1518	0.63	-2.5