Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1407

Experiment: 7H9 with nitrate 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrate 4 mM
1,583,278	+		Rv1407	0.13	+0.1
1,583,367	-		Rv1407	0.19	-0.4
1,583,367	-		Rv1407	0.19	-0.6
1,583,389	+		Rv1407	0.21	+0.1
1,583,786	-		Rv1407	0.50	-0.2
1,583,904	+		Rv1407	0.58	+1.3
1,584,030	-		Rv1407	0.68	+0.1
1,584,149	+		Rv1407	0.76	-0.7
1,584,194	+		Rv1407	0.80	-0.4
1,584,195	-		Rv1407	0.80	-0.9
1,584,195	-		Rv1407	0.80	-0.1
1,584,213	-		Rv1407	0.81	-0.3
1,584,213	-		Rv1407	0.81	+0.4
1,584,271	+		Rv1407	0.85	-0.1
1,584,271	+		Rv1407	0.85	-0.1
1,584,272	-		Rv1407	0.85	+0.8
1,584,272	-		Rv1407	0.85	-1.0
1,584,272	-		Rv1407	0.85	-0.4
1,584,272	-		Rv1407	0.85	-0.6
1,584,495	+				-0.2
1,584,495	+				-1.1
1,584,496	-				-0.1