Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1225c

Experiment: 7H9 with nitrate 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrate 4 mM
1,367,892	+				-2.1
1,368,192	+		Rv1225c	0.36	-0.3
1,368,193	-		Rv1225c	0.36	-0.4
1,368,193	-		Rv1225c	0.36	-0.2
1,368,193	-		Rv1225c	0.36	-0.7
1,368,238	+		Rv1225c	0.42	-1.4
1,368,239	-		Rv1225c	0.42	-0.3
1,368,239	-		Rv1225c	0.42	+2.5
1,368,285	+		Rv1225c	0.47	-0.6
1,368,285	+		Rv1225c	0.47	-0.5
1,368,286	-		Rv1225c	0.48	-0.9
1,368,286	-		Rv1225c	0.48	-1.0
1,368,588	+		Rv1225c	0.84	-0.6
1,368,588	+		Rv1225c	0.84	-0.2
1,368,589	-		Rv1225c	0.84	-0.3
1,368,726	+				-0.1
1,368,737	+				-0.1
1,368,738	-				+1.9
1,368,738	-				-0.1
1,368,930	-				-1.8
1,369,055	-		Rv1226c	0.15	+1.3
1,369,487	+		Rv1226c	0.45	-2.1
1,369,488	-		Rv1226c	0.45	-0.7
1,369,528	+		Rv1226c	0.48	+0.3
1,369,528	+		Rv1226c	0.48	+0.2
1,369,528	+		Rv1226c	0.48	+0.3
1,369,529	-		Rv1226c	0.48	+0.0